| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g000900.1 |
| Family | CE8 |
| Protein Properties | Length: 520 Molecular Weight: 53885.7 Isoelectric Point: 5.6011 |
| Chromosome | Chromosome/Scaffold: 5 Start: 838154 End: 839832 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 191 | 485 | 0 |
| ATSGDGQFASITAALAAQKDQTGSEQSILTIFIKEGVYNEILNITRKHVILIGEGAGKTVITGNRSYGFDNLTTPDTATVSVHGMAFMAQDLTIRNTAGP KGLQAVALMSQSNFSLIYRCSIEGYQDTLFANKGDQIYLETDIHGTVDFVFGYAKASFLGCRLLVRSSGLGASKPNVITAQGRSNSTDRSGFSFQNCSVK ADEGADLTGVKTFLGRPWKNHSHVIFMESFLDSIVNFTGWVEWEGRGPIPETVLYLEYDNYGPGADTSRRINITAVRIVTDCHEAAQYTADPFVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 520 Download |
| MAQAFTTPLV LACLLMTTIM APGGTSGGVS TTTEALPTVT GGGGSVMQPP ATDATVLPTV 60 GGGLSSTHTE ALPSTTGGGS GHWLPPAAAT TAVMLPTVGG GSGSGSGLST TDTEAPATTT 120 GSSGQPPAAA AAVTLPTTPT VGVLSTMDTD QTLSGGGKLP LWVVRLLALG GAPPSLANMV 180 GTTHVFVAKN ATSGDGQFAS ITAALAAQKD QTGSEQSILT IFIKEGVYNE ILNITRKHVI 240 LIGEGAGKTV ITGNRSYGFD NLTTPDTATV SVHGMAFMAQ DLTIRNTAGP KGLQAVALMS 300 QSNFSLIYRC SIEGYQDTLF ANKGDQIYLE TDIHGTVDFV FGYAKASFLG CRLLVRSSGL 360 GASKPNVITA QGRSNSTDRS GFSFQNCSVK ADEGADLTGV KTFLGRPWKN HSHVIFMESF 420 LDSIVNFTGW VEWEGRGPIP ETVLYLEYDN YGPGADTSRR INITAVRIVT DCHEAAQYTA 480 DPFVDANFWM PKDKEGRDII PYARGLSRDP TACPPATRA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 3.0e-78 | 191 | 491 | 305 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02488 | PLN02488 | 1.0e-79 | 185 | 506 | 326 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 1.0e-79 | 191 | 506 | 318 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 4.0e-80 | 194 | 506 | 317 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 3.0e-103 | 184 | 487 | 308 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA94334.1 | 0 | 156 | 491 | 25 | 361 | Pectinesterase family protein [Oryza sativa (japonica cultivar-group)] |
| GenBank | EAY80256.1 | 0 | 130 | 506 | 20 | 382 | hypothetical protein OsI_35428 [Oryza sativa Indica Group] |
| GenBank | EAY81365.1 | 0 | 156 | 491 | 25 | 361 | hypothetical protein OsI_36536 [Oryza sativa Indica Group] |
| RefSeq | NP_001067418.1 | 0 | 129 | 506 | 19 | 382 | Os11g0192400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002450124.1 | 0 | 1 | 519 | 1 | 519 | hypothetical protein SORBIDRAFT_05g000900 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 191 | 490 | 8 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 191 | 490 | 12 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 3uw0_A | 7e-21 | 197 | 455 | 43 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 5e-18 | 182 | 479 | 2 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 5e-18 | 182 | 479 | 2 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Signal Peptide | |||||
|---|---|---|---|---|---|
 | |||||
| Cleavage Site | |||||
| 27 | |||||
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DY946604 | 286 | 221 | 506 | 0 |
| DY948282 | 286 | 221 | 506 | 0 |
| EL419338 | 272 | 221 | 492 | 0 |
| CO475715 | 295 | 191 | 479 | 0 |
| DY801979 | 303 | 191 | 491 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Oryza sativa | LOC_Os08g12410.1 | LOC_Os11g36240.1 | |||
| Panicum virgatum | Pavirv00057340m | ||||
| Setaria italica | Si022417m | Si019968m | Si025266m.144.297 | Si025266m.144.297 | |
| Sorghum bicolor | Sb04g037740.1 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |