| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g001900.1 |
| Family | GH51 |
| Protein Properties | Length: 672 Molecular Weight: 73973.2 Isoelectric Point: 4.762 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2064829 End: 2070633 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 188 | 662 | 0 |
| DGLQNLASATITVSGESNWTKVEQKLVAKGTNRTSRLQITTNKKGVVWFDQVSLMPEDTYKGHGFRTELISMILDLKPRFLRFPGGCFVEGEWLRNAFRW RESIGPWEERPGHFGDVWHYWTDDGLGYYEFLQLAEDLDAEPIWVFNNGVSHNDEVDTAAIAPFVKDVLDSIEFARGSANSTWGSVRAAMGHPEPFPVKY VAIGNEDCGKKFYRGNYLKFYNAIRQAYPDIQMISNCDGSSTPLDHPADLYDFHVYTDSKTLFNMKSTFDRTSRSGPKAFVSEYAVWRGDAGRGSLLASL AEAAFLTGLEKNSDIVYMASYAPLFVNNNDQTWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMLHPTTISSSYSGSLAASAITWQDSENSFLRVKVINF GSDAVTLTISTTGLQASINALGSTATVLTSANVMDENSFSNPTKVVPVKSDMSNAAEQMQVTLAPHSFSSFDLAL | |||
| Full Sequence |
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| Protein Sequence Length: 672 Download |
| MVDACSTRVD KWKPMGTGKD AAPRAILCFL FLFCLGCKCL ASELEATQTA TLTVDASPQL 60 ARKIPDTLFG IFFEEINHAG AGGIWAELVS NRGFEAGGLH TPSNIDPWSI IGDDSSIYVE 120 TDRTSCFSRN IIALRMEVLC DNCPTGGVGI YNPGFWGMNI EDGKAYNLVM YVKSPETTDL 180 IVSLTSSDGL QNLASATITV SGESNWTKVE QKLVAKGTNR TSRLQITTNK KGVVWFDQVS 240 LMPEDTYKGH GFRTELISMI LDLKPRFLRF PGGCFVEGEW LRNAFRWRES IGPWEERPGH 300 FGDVWHYWTD DGLGYYEFLQ LAEDLDAEPI WVFNNGVSHN DEVDTAAIAP FVKDVLDSIE 360 FARGSANSTW GSVRAAMGHP EPFPVKYVAI GNEDCGKKFY RGNYLKFYNA IRQAYPDIQM 420 ISNCDGSSTP LDHPADLYDF HVYTDSKTLF NMKSTFDRTS RSGPKAFVSE YAVWRGDAGR 480 GSLLASLAEA AFLTGLEKNS DIVYMASYAP LFVNNNDQTW NPDAIVFNSW QHYGTPSYWM 540 QTLFRESSGA MLHPTTISSS YSGSLAASAI TWQDSENSFL RVKVINFGSD AVTLTISTTG 600 LQASINALGS TATVLTSANV MDENSFSNPT KVVPVKSDMS NAAEQMQVTL APHSFSSFDL 660 ALAQSKLVAE M* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06964 | Alpha-L-AF_C | 3.0e-32 | 469 | 654 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| COG3534 | AbfA | 1.0e-33 | 251 | 656 | 482 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| smart00813 | Alpha-L-AF_C | 2.0e-46 | 469 | 654 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27961.1 | 0 | 19 | 671 | 4 | 656 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 1 | 671 | 1 | 680 | unknown [Zea mays] |
| GenBank | EEC67598.1 | 0 | 36 | 671 | 21 | 658 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| RefSeq | NP_001148977.1 | 0 | 1 | 671 | 1 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 19 | 671 | 4 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 1e-22 | 251 | 662 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 1e-22 | 251 | 662 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 1e-22 | 251 | 662 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 1e-22 | 251 | 662 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 1e-22 | 251 | 662 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GT046204 | 348 | 236 | 583 | 0 |
| GO801860 | 329 | 104 | 432 | 0 |
| GT048615 | 348 | 296 | 642 | 0 |
| GT036166 | 331 | 41 | 371 | 0 |
| HO852683 | 426 | 251 | 672 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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