| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g001900.2 |
| Family | GH51 |
| Protein Properties | Length: 658 Molecular Weight: 72355.3 Isoelectric Point: 4.7076 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2064607 End: 2070431 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 174 | 648 | 0 |
| DGLQNLASATITVSGESNWTKVEQKLVAKGTNRTSRLQITTNKKGVVWFDQVSLMPEDTYKGHGFRTELISMILDLKPRFLRFPGGCFVEGEWLRNAFRW RESIGPWEERPGHFGDVWHYWTDDGLGYYEFLQLAEDLDAEPIWVFNNGVSHNDEVDTAAIAPFVKDVLDSIEFARGSANSTWGSVRAAMGHPEPFPVKY VAIGNEDCGKKFYRGNYLKFYNAIRQAYPDIQMISNCDGSSTPLDHPADLYDFHVYTDSKTLFNMKSTFDRTSRSGPKAFVSEYAVWRGDAGRGSLLASL AEAAFLTGLEKNSDIVYMASYAPLFVNNNDQTWNPDAIVFNSWQHYGTPSYWMQTLFRESSGAMLHPTTISSSYSGSLAASAITWQDSENSFLRVKVINF GSDAVTLTISTTGLQASINALGSTATVLTSANVMDENSFSNPTKVVPVKSDMSNAAEQMQVTLAPHSFSSFDLAL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 658 Download |
| MGTGKDAAPR AILCFLFLFC LGCKCLASEL EATQTATLTV DASPQLARKI PDTLFGIFFE 60 EINHAGAGGI WAELVSNRGF EAGGLHTPSN IDPWSIIGDD SSIYVETDRT SCFSRNIIAL 120 RMEVLCDNCP TGGVGIYNPG FWGMNIEDGK AYNLVMYVKS PETTDLIVSL TSSDGLQNLA 180 SATITVSGES NWTKVEQKLV AKGTNRTSRL QITTNKKGVV WFDQVSLMPE DTYKGHGFRT 240 ELISMILDLK PRFLRFPGGC FVEGEWLRNA FRWRESIGPW EERPGHFGDV WHYWTDDGLG 300 YYEFLQLAED LDAEPIWVFN NGVSHNDEVD TAAIAPFVKD VLDSIEFARG SANSTWGSVR 360 AAMGHPEPFP VKYVAIGNED CGKKFYRGNY LKFYNAIRQA YPDIQMISNC DGSSTPLDHP 420 ADLYDFHVYT DSKTLFNMKS TFDRTSRSGP KAFVSEYAVW RGDAGRGSLL ASLAEAAFLT 480 GLEKNSDIVY MASYAPLFVN NNDQTWNPDA IVFNSWQHYG TPSYWMQTLF RESSGAMLHP 540 TTISSSYSGS LAASAITWQD SENSFLRVKV INFGSDAVTL TISTTGLQAS INALGSTATV 600 LTSANVMDEN SFSNPTKVVP VKSDMSNAAE QMQVTLAPHS FSSFDLALAQ SKLVAEM* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06964 | Alpha-L-AF_C | 2.0e-32 | 455 | 640 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| COG3534 | AbfA | 9.0e-34 | 237 | 642 | 482 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| smart00813 | Alpha-L-AF_C | 3.0e-46 | 455 | 640 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27961.1 | 0 | 5 | 657 | 4 | 656 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 3 | 657 | 25 | 680 | unknown [Zea mays] |
| GenBank | EEC67598.1 | 0 | 22 | 657 | 21 | 658 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| RefSeq | NP_001148977.1 | 0 | 3 | 657 | 25 | 680 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 5 | 657 | 4 | 656 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 1e-22 | 237 | 648 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 1e-22 | 237 | 648 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 1e-22 | 237 | 648 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 1e-22 | 237 | 648 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 1e-22 | 237 | 648 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
