| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g001996.1 |
| Family | PL4 |
| Protein Properties | Length: 235 Molecular Weight: 25645.3 Isoelectric Point: 10.1925 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2177896 End: 2181254 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 43 | 192 | 3.3e-37 |
| TLRVDRRHQVVVVDNGVVQVTLSKPQGHITGVRYNGQRNLLQYTGGQRTSGGYWDVVWNYPGSGHPRGMFDMLDSTEFSVVTSREDQVELSFRSTYDPSR QDSVRLNIDKRFVMLKGSSGFYCYAIFEHNSSCPALNVSEARLAFKLNAD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 235 Download |
| MATAGGGGGG AVIRLLLLLL LEAIVIMLIA GVAQSSSAAR GVTLRVDRRH QVVVVDNGVV 60 QVTLSKPQGH ITGVRYNGQR NLLQYTGGQR TSGGYWDVVW NYPGSGHPRG MFDMLDSTEF 120 SVVTSREDQV ELSFRSTYDP SRQDSVRLNI DKRFVMLKGS SGFYCYAIFE HNSSCPALNV 180 SEARLAFKLN ADIKVGNGYV PTTRQIRFNL QGRVVANGTY TLRIAVAAAQ MSRLQ 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10317 | RGL4_C | 0.0002 | 200 | 235 | 37 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 7.0e-18 | 63 | 193 | 134 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 4.0e-56 | 63 | 192 | 130 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 41 | 209 | 47 | 211 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABA96404.1 | 0.0000005 | 194 | 235 | 572 | 612 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066077.1 | 0 | 41 | 192 | 47 | 195 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066077.1 | 0.0000005 | 194 | 235 | 559 | 599 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002450211.1 | 0 | 35 | 235 | 35 | 235 | hypothetical protein SORBIDRAFT_05g001996 [Sorghum bicolor] |
