| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g002745.1 |
| Family | CBM43 |
| Protein Properties | Length: 396 Molecular Weight: 39895.5 Isoelectric Point: 6.4941 |
| Chromosome | Chromosome/Scaffold: 5 Start: 2926377 End: 2928549 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 244 | 326 | 8.7e-34 |
| WCVVKPAGSSEAALQNALDYACGIGGTDCSAIQPSGSCYYPNTIQAHASYAFNTYYQRNPVPSSCDFGGTAMLVTANPSSGSC | |||
| Full Sequence |
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| Protein Sequence Length: 396 Download |
| TAHTVYCLHS TLHLLLSPSS PSLLPPSGRK NARAHLLPTH PTTPQGRERD KGHAELTGGG 60 GGELEKKEQG PSMARPAALL LFLLVLSAFQ AGELPRCSAA AAAAAAGKPA VLVHDDVSPV 120 QDTNPIATVP SNNPTPTIIT VPSTNPTITI PSLNPLPTPI TAPSTNTPSP SSTMPPPVPV 180 IYPLPTPSTS FPPTVPVTNP AVTTPSTSPP STPTPVNNPP VSNPTPTTPA PTVTTPAASG 240 RQVWCVVKPA GSSEAALQNA LDYACGIGGT DCSAIQPSGS CYYPNTIQAH ASYAFNTYYQ 300 RNPVPSSCDF GGTAMLVTAN PSSGSCVFAS SSPSSSSTAG YDPASTTNPL SSSPGSDSGA 360 PVLNASGAGS SESSDFGFDI PGAVNLGSGW RSASPP 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-20 | 244 | 315 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-32 | 244 | 321 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR36168.1 | 0 | 73 | 396 | 1 | 319 | unknown [Zea mays] |
| GenBank | EAZ17118.1 | 0 | 114 | 395 | 39 | 305 | hypothetical protein OsJ_32617 [Oryza sativa Japonica Group] |
| GenBank | EEC73314.1 | 0 | 114 | 395 | 38 | 304 | hypothetical protein OsI_07501 [Oryza sativa Indica Group] |
| RefSeq | XP_002450265.1 | 0 | 1 | 396 | 1 | 396 | hypothetical protein SORBIDRAFT_05g002745 [Sorghum bicolor] |
| RefSeq | XP_002512573.1 | 0 | 112 | 385 | 102 | 375 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-18 | 235 | 332 | 6 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CA077844 | 158 | 239 | 396 | 0 |
| CF637059 | 154 | 244 | 396 | 0 |
| DR822000 | 159 | 239 | 396 | 0 |
| FL789497 | 143 | 239 | 381 | 0 |
| CA121131 | 136 | 239 | 374 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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