Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb05g006610.1 |
Family | CE8 |
Protein Properties | Length: 578 Molecular Weight: 58626.3 Isoelectric Point: 8.276 |
Chromosome | Chromosome/Scaffold: 5 Start: 10950162 End: 10952719 |
Description | pectin methylesterase 61 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 273 | 568 | 0 |
AVVALDGSGTHRSINEAIAAVTGGGGGSSGRKVIHVKAGRYEESVSISSKQKNVMLMGDGKGKSVIVGHKSAGEGYTTYASATVAAMGSGFIAKGLTILN TAGAGKGQAVALRVGGDLSVVYQCGIQAYQDTLYVHSGRQFYAGTDIAGTVDFIFGNAAVVLQSCDIQARRPSPGQEDTVTAQGRTDPNQNTGISIHRCR VTAAPDLAGTATPVYLGRPWRRYSRTVVMESFLDRSVSPAGWLEWSGQFALSTLYYGEYGNTGPGAGTSRRVTWPGVHTSLSRSDAVRFTVAEFIV |
Full Sequence |
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Protein Sequence Length: 578 Download |
MATVVVLLAL ATGVAPAATE PKHDDGAVVV VSSTIGTTAS PSSTAMNVTA ICQTTPYPSA 60 CETALSSSSS PAPPPGGSSS SSSSSAADPF AASVQYAMAR ALSARAVARN VSAAHRRRPP 120 PRGAAHRPPP GVQDCAELLD ISLDQLGDAL AAAGAGGGGG DADGVTTWLS AALTNQATCG 180 DSLAADADTA GRDAVRARVS ALSQFIATAL ALHVNKIKGH ESSSSSRSSP SGSSSPSTPA 240 ATTTAFPSWV TQQDRNLLEF SAGASGGAIV ADAVVALDGS GTHRSINEAI AAVTGGGGGS 300 SGRKVIHVKA GRYEESVSIS SKQKNVMLMG DGKGKSVIVG HKSAGEGYTT YASATVAAMG 360 SGFIAKGLTI LNTAGAGKGQ AVALRVGGDL SVVYQCGIQA YQDTLYVHSG RQFYAGTDIA 420 GTVDFIFGNA AVVLQSCDIQ ARRPSPGQED TVTAQGRTDP NQNTGISIHR CRVTAAPDLA 480 GTATPVYLGR PWRRYSRTVV MESFLDRSVS PAGWLEWSGQ FALSTLYYGE YGNTGPGAGT 540 SRRVTWPGVH TSLSRSDAVR FTVAEFIVGT RGWVALE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02713 | PLN02713 | 1.0e-135 | 165 | 574 | 422 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 9.0e-138 | 134 | 570 | 440 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 3.0e-140 | 134 | 569 | 443 | + pectinesterase/pectinesterase inhibitor | ||
PLN02170 | PLN02170 | 2.0e-152 | 132 | 569 | 439 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 4.0e-167 | 272 | 569 | 300 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD19539.1 | 0 | 4 | 569 | 19 | 556 | putative pectinesterase [Oryza sativa Japonica Group] |
RefSeq | NP_001048322.1 | 0 | 4 | 569 | 29 | 566 | Os02g0783000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148248.1 | 0 | 18 | 574 | 45 | 567 | pectinesterase-2 [Zea mays] |
RefSeq | XP_002449226.1 | 0 | 1 | 577 | 1 | 577 | hypothetical protein SORBIDRAFT_05g006610 [Sorghum bicolor] |
RefSeq | XP_002454668.1 | 0 | 40 | 569 | 50 | 560 | hypothetical protein SORBIDRAFT_04g035200 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 272 | 569 | 8 | 304 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 269 | 569 | 1 | 300 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-20 | 268 | 542 | 1 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-20 | 268 | 542 | 1 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 3e-20 | 268 | 542 | 1 | 315 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |