| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g007100.1 |
| Family | GH51 |
| Protein Properties | Length: 594 Molecular Weight: 65525.1 Isoelectric Point: 6.2032 |
| Chromosome | Chromosome/Scaffold: 5 Start: 12457733 End: 12464549 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 104 | 580 | 0 |
| KSKWIKVEKKLVAKGTNRTSRLQITSKKKGVVWFDQVSLMPADTYKGHGFRNGLVSMLLDLKPRFLRFPDTFETIYTLHANIVGGCFVEGGWLRNAFRWR QSIGPWEERPGHFGDCWQYWTDDGLGYFEFLQLSEDIGAAPIWVFNTGISYNDEVNTAIIAPFVKEILDSLEFARGSVNSTWGSVRAKMGHPKPFPVKYV AIGNEDCERKFYKGNYLKFYNAIREAYPDIQLISNCDGSSVPLDHPADIYDFHVYADAKTLFSMKNTFDKSPRSGPKAFVSEYAVWKTDAGRGTLLASLA EAAFLTGLEKNSDAVEMACHAPLFVNDDIEKKWNPDVIVFNTWQHYGTPSYWMQKIFRESSGATVHPTTISSGGGGSANSLAASAITWKDSENNSFLRVK IVNFESDAARVTISTTGLESSIDVLRSTATVLTSTNVMDENSFSNPNKVVPVKSQLFEAGAQMQVTLAPHSFTSFDL | |||
| Full Sequence |
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| Protein Sequence Length: 594 Download |
| MGNGGAGGIW AELVSNRGFE AGGPNTPSNI DPWLIVGDDS SIFVETDRSS CFSRNIVALR 60 MEVLCNDCPA GGVGIYNPGF WGMRLYFQNI EDGKAYNLVI VAGKSKWIKV EKKLVAKGTN 120 RTSRLQITSK KKGVVWFDQV SLMPADTYKG HGFRNGLVSM LLDLKPRFLR FPDTFETIYT 180 LHANIVGGCF VEGGWLRNAF RWRQSIGPWE ERPGHFGDCW QYWTDDGLGY FEFLQLSEDI 240 GAAPIWVFNT GISYNDEVNT AIIAPFVKEI LDSLEFARGS VNSTWGSVRA KMGHPKPFPV 300 KYVAIGNEDC ERKFYKGNYL KFYNAIREAY PDIQLISNCD GSSVPLDHPA DIYDFHVYAD 360 AKTLFSMKNT FDKSPRSGPK AFVSEYAVWK TDAGRGTLLA SLAEAAFLTG LEKNSDAVEM 420 ACHAPLFVND DIEKKWNPDV IVFNTWQHYG TPSYWMQKIF RESSGATVHP TTISSGGGGS 480 ANSLAASAIT WKDSENNSFL RVKIVNFESD AARVTISTTG LESSIDVLRS TATVLTSTNV 540 MDENSFSNPN KVVPVKSQLF EAGAQMQVTL APHSFTSFDL ALAPSKFATL ADV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 9.0e-30 | 152 | 574 | 492 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 5.0e-40 | 384 | 574 | 205 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 6.0e-51 | 384 | 574 | 200 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC67598.1 | 0 | 1 | 587 | 63 | 654 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| RefSeq | NP_001065660.1 | 0 | 1 | 587 | 63 | 654 | Os11g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001066062.1 | 0 | 1 | 587 | 65 | 656 | Os12g0128700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002442705.1 | 0 | 1 | 587 | 61 | 652 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| RefSeq | XP_002450568.1 | 0 | 1 | 593 | 1 | 593 | hypothetical protein SORBIDRAFT_05g007100 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 6e-18 | 152 | 582 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 6e-18 | 152 | 582 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 6e-18 | 152 | 582 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 6e-18 | 152 | 582 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 6e-18 | 152 | 582 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GT046204 | 337 | 137 | 473 | 0 |
| GT048615 | 352 | 211 | 562 | 0 |
| HO852683 | 439 | 152 | 587 | 0 |
| DR822775 | 301 | 131 | 431 | 0 |
| GO801860 | 348 | 29 | 347 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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