| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g007160.1 |
| Family | GH116 |
| Protein Properties | Length: 952 Molecular Weight: 107216 Isoelectric Point: 6.2214 |
| Chromosome | Chromosome/Scaffold: 5 Start: 12636238 End: 12644972 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH116 | 530 | 891 | 0 |
| GQFLYLEGIEYYMWNTYDVHFYASFSLIMLFPKLQLSVQRDFAAAVMMHDPEKLRILHDGKWAARKVLGAVPHDLGLYDPWFKVNAYTLYNTDRWKDLNP KFVLQVYRDVVATGDKSFARAVWPSVYIAMAYMEQFDKDKDGMIENEDFPDQTYDVWSMAGISAYCGGLWVAALQAASALAREVGDKASEKLFWDKYEKA KSVYSKLWNGSYFSYDDGDNKVSTSIQADQLAGQWYAKACGLFPIVDKDKAQSALEKIFSFNVMKFKDGTRGAMNGMWPDGTVDMSAMQSREIWPGVTYA LAASMIQEGMVEQGFKTAEGIYHAAWSPEGLGYSFQTPEAWNNDDEYRSLCYMRPLAIWAMQ | |||
| Full Sequence |
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| Protein Sequence Length: 952 Download |
| MVETHVDEQP KGVSRNRPPA RMNGDEEKVY SGQLPVLTWE HKLTRGRHDL PPFRLTWRET 60 MQLAGIGLRL SRHILEETSK GRIAVIDPMK KRSARSGQGV PLGGSIGRSY KGDFQRWQLF 120 PGTCEDKPVL ANQFSAFISR QDGRKYSTVL HPGKPDLPKG SDISGIGSWD WNMSGEQSTY 180 HALYPRAWTV YDGEPDPELN IVCRQISPII PHNYQQSSYP VAVFTFTVTN SGHTAADVTL 240 LFTWANSVGG KSELTGYHSN SSMIEKDGVH GILLHHRTAD GQPPVTFVIA AQEKEDILIS 300 QCPYFVISGS SASDEFTAKD MWNSVKEHGS FDHLDPIKTS MCSRPGSSIG AAIAASVKLA 360 PKATKDISFS LAWACPEVKF SSGKTYHRRY TKFYGTDGDA AATLAHDAIL EHASWERQID 420 EWQDPILQDE RFPAWYPVTL FNELYYLNAG GTIWTDGLPP IQSLTAIGWK KFSLDMLNGE 480 SDDFNEMVRQ NNTASDILHR MASVFERMHA SIASNSAIGT TLLQGEENIG QFLYLEGIEY 540 YMWNTYDVHF YASFSLIMLF PKLQLSVQRD FAAAVMMHDP EKLRILHDGK WAARKVLGAV 600 PHDLGLYDPW FKVNAYTLYN TDRWKDLNPK FVLQVYRDVV ATGDKSFARA VWPSVYIAMA 660 YMEQFDKDKD GMIENEDFPD QTYDVWSMAG ISAYCGGLWV AALQAASALA REVGDKASEK 720 LFWDKYEKAK SVYSKLWNGS YFSYDDGDNK VSTSIQADQL AGQWYAKACG LFPIVDKDKA 780 QSALEKIFSF NVMKFKDGTR GAMNGMWPDG TVDMSAMQSR EIWPGVTYAL AASMIQEGMV 840 EQGFKTAEGI YHAAWSPEGL GYSFQTPEAW NNDDEYRSLC YMRPLAIWAM QWALSNPKLH 900 NTPQADIPQD SFPKNQFAYA RITKLLQLPE EETSKSFLRV VYEIIRNRFR S* 960 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4354 | COG4354 | 2.0e-28 | 99 | 456 | 373 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 6.0e-62 | 99 | 422 | 336 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 6.0e-76 | 529 | 894 | 385 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 3.0e-169 | 530 | 892 | 367 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX95400.1 | 0 | 84 | 951 | 28 | 931 | At5g49900 [Oryza sativa Japonica Group] |
| GenBank | EEC67936.1 | 0 | 1 | 951 | 1 | 950 | hypothetical protein OsI_35656 [Oryza sativa Indica Group] |
| RefSeq | NP_001067588.1 | 0 | 1 | 951 | 1 | 950 | Os11g0242100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002450573.1 | 0 | 1 | 951 | 1 | 951 | hypothetical protein SORBIDRAFT_05g007160 [Sorghum bicolor] |
| RefSeq | XP_002528846.1 | 0 | 11 | 942 | 9 | 942 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GR335547 | 268 | 433 | 700 | 0 |
| DY292040 | 359 | 543 | 898 | 0 |
| CB622732 | 267 | 419 | 685 | 0 |
| DT947783 | 265 | 630 | 894 | 0 |
| FF354175 | 282 | 470 | 750 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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