y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb05g018090.1 |
Family | PL4 |
Protein Properties | Length: 697 Molecular Weight: 76202.5 Isoelectric Point: 4.9156 |
Chromosome | Chromosome/Scaffold: 5 Start: 44377493 End: 44381250 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 38 | 642 | 0 |
RGVTLRVGPRQVVVDNGAVQVALSAPDGRITGVSYSGEPNLLEYDAGAGEGDYGGYWDSVWNYPGSDLRQLYDTLDSTEFNVVSSSEDQVELSFRSSSGF YCYAIFEHDRAYPALNITEARLVFKLNPAKFNYMAITDDIQRYMPSAVDREEPRAVPLAYKEAVLLVDPKEPQFRGEVDDKYQYSLDNKDNVVHGWISGS DPNPIGFWVITPSNEFKSGGPLKRELTSHVGPTSLTMFMGTHYVGKYMVADIDDGEEWKKVLGPVFIYLNSGPKTGDLWEDAKAQAEAEARSWPYGFLAS PDFPKSAERGSVTGRLLVSDRHLNKKHDMPAGAAAYVGLASPGQPGSWATESKGYQFWTRAASDGTFTIANVREGVYDLYAFVPGVLGDYYDRGSPSSPL TVAPGRAVAVGDLVFEPPRSGPTVWEIGVPDRTAAEFYVPDPDPRYVNRVFVGDRDRYRQYGLWERYAELYPDKDLVFTVGESNESKDWFFAHVTRKVGQ VAVPTTWQIRFSLDSVEADGDYTLRIAIAASERCRLQVQVNDDGDDARRGGVFTAAGDMAMGDDNAITRHGIHGMQRSLEFAVGGHLLRRGGNTIGLKLI SHQQG |
Full Sequence |
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Protein Sequence Length: 697 Download |
MAAAPAQAGR FLLVVLVATA SLLPWLAGVS TEAAAAGRGV TLRVGPRQVV VDNGAVQVAL 60 SAPDGRITGV SYSGEPNLLE YDAGAGEGDY GGYWDSVWNY PGSDLRQLYD TLDSTEFNVV 120 SSSEDQVELS FRSSSGFYCY AIFEHDRAYP ALNITEARLV FKLNPAKFNY MAITDDIQRY 180 MPSAVDREEP RAVPLAYKEA VLLVDPKEPQ FRGEVDDKYQ YSLDNKDNVV HGWISGSDPN 240 PIGFWVITPS NEFKSGGPLK RELTSHVGPT SLTMFMGTHY VGKYMVADID DGEEWKKVLG 300 PVFIYLNSGP KTGDLWEDAK AQAEAEARSW PYGFLASPDF PKSAERGSVT GRLLVSDRHL 360 NKKHDMPAGA AAYVGLASPG QPGSWATESK GYQFWTRAAS DGTFTIANVR EGVYDLYAFV 420 PGVLGDYYDR GSPSSPLTVA PGRAVAVGDL VFEPPRSGPT VWEIGVPDRT AAEFYVPDPD 480 PRYVNRVFVG DRDRYRQYGL WERYAELYPD KDLVFTVGES NESKDWFFAH VTRKVGQVAV 540 PTTWQIRFSL DSVEADGDYT LRIAIAASER CRLQVQVNDD GDDARRGGVF TAAGDMAMGD 600 DNAITRHGIH GMQRSLEFAV GGHLLRRGGN TIGLKLISHQ QGPEGPAMVA GVMYDYIRLE 660 GPPSSRGVAS RGVPLHRVWV QILLVSSLAC FLVMSQ* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-27 | 345 | 450 | 106 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-46 | 462 | 660 | 200 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-58 | 47 | 315 | 288 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-65 | 22 | 215 | 217 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 37 | 665 | 45 | 692 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF27519.2 | 0 | 24 | 664 | 29 | 634 | Os11g0134100 [Oryza sativa Japonica Group] |
DDBJ | BAF29096.2 | 0 | 37 | 662 | 45 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
RefSeq | NP_001066077.1 | 0 | 37 | 665 | 45 | 679 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002450784.1 | 0 | 1 | 696 | 1 | 696 | hypothetical protein SORBIDRAFT_05g018090 [Sorghum bicolor] |