| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g021890.1 |
| Family | AA1 |
| Protein Properties | Length: 339 Molecular Weight: 37426.5 Isoelectric Point: 7.41 |
| Chromosome | Chromosome/Scaffold: 5 Start: 53275205 End: 53276364 |
| Description | laccase 14 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 31 | 320 | 0 |
| THYDFVIKETKVTRLCHEKTILAVNGQFPGPTIYARKGDVVVVNVYNQGSSKNITLHWHGVDQPRNPWSDGPEYITQCPIKPGANLTYRIIFTEEEGTLW WHAHSDFDRATVHGAIVVHPKRGSVYPYPRPHKEVPIILGEWWNADVEQVLLEGQRTGGDVNVSDANTINGQPGDYAPCSKNDTFRMLVEHGKTYLLRII NAGLANDMFFAVAGHRLTVVGTDGRYLKPFTVDHIMISSGQTMNILLEANHATNGSGDNSRYYMAASPFFANARLLPYDDKNTTAILEYT | |||
| Full Sequence |
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| Protein Sequence Length: 339 Download |
| MPAACLCWLL LLSMVLAFGV AASPAQASRN THYDFVIKET KVTRLCHEKT ILAVNGQFPG 60 PTIYARKGDV VVVNVYNQGS SKNITLHWHG VDQPRNPWSD GPEYITQCPI KPGANLTYRI 120 IFTEEEGTLW WHAHSDFDRA TVHGAIVVHP KRGSVYPYPR PHKEVPIILG EWWNADVEQV 180 LLEGQRTGGD VNVSDANTIN GQPGDYAPCS KNDTFRMLVE HGKTYLLRII NAGLANDMFF 240 AVAGHRLTVV GTDGRYLKPF TVDHIMISSG QTMNILLEAN HATNGSGDNS RYYMAASPFF 300 ANARLLPYDD KNTTAILEYT DAPPSTGPHR LPRPAGCR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02191 | PLN02191 | 6.0e-42 | 46 | 332 | 310 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 5.0e-45 | 14 | 336 | 344 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 6.0e-48 | 32 | 336 | 329 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| pfam07732 | Cu-oxidase_3 | 4.0e-48 | 36 | 153 | 120 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| TIGR03389 | laccase | 3.0e-142 | 32 | 328 | 297 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001105915.1 | 0 | 29 | 325 | 36 | 329 | putative laccase [Zea mays] |
| RefSeq | XP_002449706.1 | 0 | 1 | 338 | 1 | 338 | hypothetical protein SORBIDRAFT_05g021890 [Sorghum bicolor] |
| RefSeq | XP_002452548.1 | 0 | 28 | 332 | 43 | 344 | hypothetical protein SORBIDRAFT_04g027860 [Sorghum bicolor] |
| RefSeq | XP_002452900.1 | 0 | 24 | 335 | 29 | 336 | hypothetical protein SORBIDRAFT_04g034610 [Sorghum bicolor] |
| RefSeq | XP_002452901.1 | 0 | 24 | 328 | 41 | 335 | hypothetical protein SORBIDRAFT_04g034620 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 4e-36 | 28 | 281 | 1 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 1asq_A | 4e-36 | 28 | 281 | 1 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 1asp_B | 4e-36 | 28 | 281 | 1 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 1asp_A | 4e-36 | 28 | 281 | 1 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 1aso_B | 4e-36 | 28 | 281 | 1 | 270 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| Transmembrane Domains | ||||
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| Start | End | |||
| 5 | 27 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 17 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EE185313 | 280 | 42 | 321 | 0 |
| CA275768 | 253 | 34 | 285 | 0 |
| CA275767 | 210 | 34 | 243 | 0 |
| CA142122 | 199 | 14 | 212 | 0 |
| CA275767 | 54 | 233 | 285 | 1.3 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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