| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g022490.1 |
| Family | CBM43 |
| Protein Properties | Length: 498 Molecular Weight: 52658.9 Isoelectric Point: 6.6248 |
| Chromosome | Chromosome/Scaffold: 5 Start: 54413611 End: 54415201 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 392 | 464 | 1.8e-22 |
| AGGRVADNVGYACSRADCTALGYGCSCGALDARGTASYAFNAYYQAQGQVESACDFQGLAVVVHDDASQGACN | |||
| GH17 | 26 | 349 | 0 |
| LGVNWGTMSTRRLPPKVIARLLTDNGFRKVKIFDADERTMKGLAGTGIETMIAVPNDMLAAVADYDRARQWVKDNVTKYTFDGGVNIKFVAVGNEPFLKA YNGSFDHVTVPALKNIQRALDEAGHGAAVKATVPVNADVYDSPASNPVPSAGRFRGDVAGVMTNMVRFLNRSGAPLTVNIYPFLSLYGDADFPLDFAFFD GGGGSAKPVVDGRVVYTNVFDANFDTLVSALRRVGLGHLPVMIGEVGWPTDGDRHATAALAERFYAGLLKRLAARRGTPLRPGARIEVYLFGLIDEDAKS VAPGNFERHWGIFTFDGRPKFPLD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 498 Download |
| MAAPRVLLAG WWFAVAAVAA AGVDALGVNW GTMSTRRLPP KVIARLLTDN GFRKVKIFDA 60 DERTMKGLAG TGIETMIAVP NDMLAAVADY DRARQWVKDN VTKYTFDGGV NIKFVAVGNE 120 PFLKAYNGSF DHVTVPALKN IQRALDEAGH GAAVKATVPV NADVYDSPAS NPVPSAGRFR 180 GDVAGVMTNM VRFLNRSGAP LTVNIYPFLS LYGDADFPLD FAFFDGGGGS AKPVVDGRVV 240 YTNVFDANFD TLVSALRRVG LGHLPVMIGE VGWPTDGDRH ATAALAERFY AGLLKRLAAR 300 RGTPLRPGAR IEVYLFGLID EDAKSVAPGN FERHWGIFTF DGRPKFPLDL RGGGDGRPAM 360 PVPARGVEYL PRRWCVLNHI SAGGGDDDDA TAGGRVADNV GYACSRADCT ALGYGCSCGA 420 LDARGTASYA FNAYYQAQGQ VESACDFQGL AVVVHDDASQ GACNFSVQVV GSGAPVAAEV 480 TTVAAVLVLV PLFLVLL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-5 | 242 | 341 | 107 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-14 | 373 | 452 | 87 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-24 | 374 | 465 | 94 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-62 | 38 | 349 | 315 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41694.1 | 0 | 24 | 473 | 26 | 463 | glucan endo-1,3-beta-glucosidase 5 precursor [Zea mays] |
| GenBank | ACN32122.1 | 0 | 26 | 473 | 27 | 503 | unknown [Zea mays] |
| GenBank | EAY81406.1 | 0 | 29 | 466 | 32 | 461 | hypothetical protein OsI_36575 [Oryza sativa Indica Group] |
| RefSeq | NP_001140660.1 | 0 | 26 | 473 | 27 | 462 | hypothetical protein LOC100272735 [Zea mays] |
| RefSeq | XP_002449743.1 | 0 | 29 | 477 | 29 | 477 | hypothetical protein SORBIDRAFT_05g022490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 9.80909e-45 | 26 | 350 | 2 | 315 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3f55_C | 9.80909e-45 | 26 | 350 | 2 | 315 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3f55_B | 9.80909e-45 | 26 | 350 | 2 | 315 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3f55_A | 9.80909e-45 | 26 | 350 | 2 | 315 | A Chain A, Crystal Structure Of A Mammalian Sialyltransferase |
| PDB | 3em5_D | 9.80909e-45 | 26 | 350 | 2 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
