| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g025980.1 |
| Family | GH28 |
| Protein Properties | Length: 449 Molecular Weight: 48081.9 Isoelectric Point: 4.778 |
| Chromosome | Chromosome/Scaffold: 5 Start: 59526051 End: 59528712 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 64 | 413 | 0 |
| ADKGGAQLYVPRGRWLTGSFNLTSHLTIYLEQGAVIVGAKDSSQWPIVEPLPSYGQGTDLPGPRHRSLINGYNLTDVVITGNNGVIDGQGLVWWQWLLSH ELNHSRPHLLEFLYSEDIVISNLTFLNSPAWSIHPVYCSNVKVHNVTIETSLDAPLTDGIVPDSCSNLCIEDSTISVSHEAISLKSGWDKYGISFGRPTS DIHISRVDLLSSSGAALAFGSEMSGGISDIHVNHLRIHDSYKGISFKTSPGRGGYIEEVIISEVQMENVHVGIEFTGNCSTHPDDSFDLSDLPTIDQVTM KNMVGTNISVAGVLSGIDNAPFTAICLSNLNFSMAADTGSSSWSCSNVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 449 Download |
| MQVVLALVVV VLAATTARGE LRDQAPPGSR PHSVTITEFG AVGDGRTLNT VPFQNAVFYV 60 RSFADKGGAQ LYVPRGRWLT GSFNLTSHLT IYLEQGAVIV GAKDSSQWPI VEPLPSYGQG 120 TDLPGPRHRS LINGYNLTDV VITGNNGVID GQGLVWWQWL LSHELNHSRP HLLEFLYSED 180 IVISNLTFLN SPAWSIHPVY CSNVKVHNVT IETSLDAPLT DGIVPDSCSN LCIEDSTISV 240 SHEAISLKSG WDKYGISFGR PTSDIHISRV DLLSSSGAAL AFGSEMSGGI SDIHVNHLRI 300 HDSYKGISFK TSPGRGGYIE EVIISEVQME NVHVGIEFTG NCSTHPDDSF DLSDLPTIDQ 360 VTMKNMVGTN ISVAGVLSGI DNAPFTAICL SNLNFSMAAD TGSSSWSCSN VSGYSEAVFP 420 EPCTELRDPS SSPSICFSLS SYSAIAAA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 6.0e-12 | 20 | 332 | 330 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-17 | 125 | 369 | 255 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 7.0e-18 | 32 | 399 | 389 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 4.0e-22 | 31 | 394 | 376 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 2.0e-42 | 34 | 385 | 394 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC68574.1 | 0 | 27 | 446 | 28 | 447 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001066993.1 | 0 | 27 | 448 | 3 | 424 | Os12g0554800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068399.1 | 0 | 27 | 446 | 28 | 447 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130359.1 | 0 | 18 | 448 | 26 | 458 | hypothetical protein LOC100191454 [Zea mays] |
| RefSeq | XP_002451220.1 | 0 | 1 | 448 | 1 | 448 | hypothetical protein SORBIDRAFT_05g025980 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-33 | 7 | 392 | 1 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-33 | 7 | 392 | 1 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-33 | 7 | 392 | 1 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-33 | 7 | 392 | 1 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000000006 | 78 | 412 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
