| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g026400.1 |
| Family | GH3 |
| Protein Properties | Length: 791 Molecular Weight: 83634.1 Isoelectric Point: 9.1042 |
| Chromosome | Chromosome/Scaffold: 5 Start: 60266545 End: 60272125 |
| Description | beta-xylosidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 79 | 327 | 0 |
| AGVARLGVGGYEWWSEALHGVSDTGPGVKFGGAFPGATAFPQVIGAAAALNATLWELIGRAVSDEARAMYNGGRAGLTFWSPNVNIFRDPRWGRGQETPG EDPAISSRYAAAYVRGLQQPYDHNRLKLAACCKHFTAYDLDSWGGTDRFHFNAVVSPQDLEDTFNVPFRACVAGGRAASVMCSYNQVNGVPTCADQGFLR GTIRKAWGLDGYIVSDCDSVDVFFRDQHYTRTAEDAVAATLRAGLDLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 791 Download |
| MRRRPFLSIL LLLLLAASAT TPTPAASSSA RAAFACAPGG PATTLPFCRQ SLPLHARARD 60 LVSRLTRAEK VRLLVNNAAG VARLGVGGYE WWSEALHGVS DTGPGVKFGG AFPGATAFPQ 120 VIGAAAALNA TLWELIGRAV SDEARAMYNG GRAGLTFWSP NVNIFRDPRW GRGQETPGED 180 PAISSRYAAA YVRGLQQPYD HNRLKLAACC KHFTAYDLDS WGGTDRFHFN AVVSPQDLED 240 TFNVPFRACV AGGRAASVMC SYNQVNGVPT CADQGFLRGT IRKAWGLDGY IVSDCDSVDV 300 FFRDQHYTRT AEDAVAATLR AGLDLDCGPF LALYTENAVA RKKVSDADVD AALLNTVTVQ 360 MRLGMFDGDP ASGPFGHLGA ADVCTKAHQD LALDAARQSV VLLKNQRGRK HRDRDVLPLR 420 PAAHRVVAVV GPHADATVAM IGNYAGKPCR YTTPLQGVAA YAARVVHQAG CADVACQGKN 480 QPIAAAVDAA RRLTPPSSSP GLTRSLLLPG RQAELISAVA KAAKGPVILV LMSGGPIDIA 540 FAQNDPRIDG ILWVGYPGQA GGQAIADVIF GQHNPGGKLP VTWYPQDYLE KVPMTNMAMR 600 ANPARGYPGR TYRFYTGPTI HAFGHGLSYT QFTHTLAHAP AQLTVRLSTS SASASASASA 660 ASLLNATRPS RAVRVAHARC EGLTVPVHVD VRNVGDRDGA HAVLVYHVAP SSSSSSAPAG 720 TDAPARQLVA FEKVHVPAGG VARVEMGIDV CDRLSVADRD GVRRIPVGEH RLMIGELTHS 780 VTLGVEQLGA * 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1472 | BglX | 2.0e-51 | 64 | 469 | 425 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-51 | 400 | 630 | 248 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| pfam00933 | Glyco_hydro_3 | 5.0e-54 | 69 | 352 | 288 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 6.0e-70 | 116 | 752 | 692 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 46 | 783 | 761 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG29242.1 | 0 | 147 | 789 | 1 | 654 | auxin-induced beta-glucosidase [Zea mays] |
| RefSeq | NP_001068441.1 | 0 | 31 | 789 | 27 | 821 | Os11g0673200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001145980.1 | 0 | 34 | 789 | 27 | 793 | hypothetical protein LOC100279508 [Zea mays] |
| RefSeq | XP_002270249.1 | 0 | 5 | 789 | 7 | 764 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002451244.1 | 0 | 1 | 790 | 1 | 790 | hypothetical protein SORBIDRAFT_05g026400 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 116 | 775 | 91 | 722 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3u48_A | 0 | 116 | 775 | 91 | 722 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3u4a_B | 0 | 116 | 775 | 91 | 722 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3u4a_A | 0 | 116 | 775 | 91 | 722 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2x41_A | 1e-37 | 115 | 783 | 78 | 707 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
