| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g026630.1 |
| Family | AA1 |
| Protein Properties | Length: 601 Molecular Weight: 65464 Isoelectric Point: 6.1497 |
| Chromosome | Chromosome/Scaffold: 5 Start: 60626278 End: 60629989 |
| Description | laccase 7 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA1 | 29 | 584 | 0 |
| AAAVEHTFVVSQVNMTHMCNEIPVTVVNGQLPGPTIEVTEGDSVIVHVVNKSPYNMTIHWHGVYQMRNCWNDGVPMVTQRPIPPNGNFTYRFDVAGQEGT LWWHAHDAFLRGTIYGALIIRPRQGGAAAYPFPKPHKEVPILIGEWWEKDLAAVDRNFSKGLYDEFSSGSTINGKLGDLFNCSGVFEDGYVLDVEPGKTY LLRIINAALFSEYFLKIAGHKFTVVAADANYLTPYTTDVIVIAPGETMDALVVADAAPGRYYIAAQPIQAPPPDTQTPEFATRGTLQYNTGGATNSSRDD NVVALAPEMPDEHDTIKSFYFHGNLTGLRHRRQRARVPASADERLYVTLGLGSICRHGRKTCKRGDEPESNLVIANMNNVSFHDATATPILEAHYYHRRR DDDNGGEGTAAVLPDHPPSAFNFTDTALIPFGPEEMRLEPTNRGTVVRRFRHGAVVDVVFQSTAMLQSDSNPMHLHGHDMFVLAQGIGNYDAARDEAKFN LVNPARKNTVLVPNLGWAAIRFVADNPGAWFIHCHFEFHLAMGMAAVFIVEDGPTP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 601 Download |
| MAAAAAAAIA VVAATIILSA ATTITPAAAA AVEHTFVVSQ VNMTHMCNEI PVTVVNGQLP 60 GPTIEVTEGD SVIVHVVNKS PYNMTIHWHG VYQMRNCWND GVPMVTQRPI PPNGNFTYRF 120 DVAGQEGTLW WHAHDAFLRG TIYGALIIRP RQGGAAAYPF PKPHKEVPIL IGEWWEKDLA 180 AVDRNFSKGL YDEFSSGSTI NGKLGDLFNC SGVFEDGYVL DVEPGKTYLL RIINAALFSE 240 YFLKIAGHKF TVVAADANYL TPYTTDVIVI APGETMDALV VADAAPGRYY IAAQPIQAPP 300 PDTQTPEFAT RGTLQYNTGG ATNSSRDDNV VALAPEMPDE HDTIKSFYFH GNLTGLRHRR 360 QRARVPASAD ERLYVTLGLG SICRHGRKTC KRGDEPESNL VIANMNNVSF HDATATPILE 420 AHYYHRRRDD DNGGEGTAAV LPDHPPSAFN FTDTALIPFG PEEMRLEPTN RGTVVRRFRH 480 GAVVDVVFQS TAMLQSDSNP MHLHGHDMFV LAQGIGNYDA ARDEAKFNLV NPARKNTVLV 540 PNLGWAAIRF VADNPGAWFI HCHFEFHLAM GMAAVFIVED GPTPNTSLPP PPPGFMEGSP 600 * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03388 | ascorbase | 5.0e-34 | 405 | 576 | 175 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03388 | ascorbase | 1.0e-41 | 47 | 290 | 265 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| pfam07732 | Cu-oxidase_3 | 1.0e-48 | 37 | 153 | 119 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| TIGR03389 | laccase | 0 | 34 | 581 | 550 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK92654.1 | 0 | 33 | 558 | 42 | 518 | AC079634_15 Putative laccase [Oryza sativa Japonica Group] |
| RefSeq | NP_001064399.1 | 0 | 33 | 595 | 42 | 599 | Os10g0346300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146681.1 | 0 | 33 | 600 | 42 | 604 | hypothetical protein LOC100280281 [Zea mays] |
| RefSeq | XP_002449982.1 | 0 | 29 | 600 | 29 | 600 | hypothetical protein SORBIDRAFT_05g026630 [Sorghum bicolor] |
| RefSeq | XP_002457562.1 | 0 | 27 | 592 | 26 | 587 | hypothetical protein SORBIDRAFT_03g009410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 47 | 576 | 19 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asq_A | 0 | 47 | 576 | 19 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asp_B | 0 | 47 | 576 | 19 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1asp_A | 0 | 47 | 576 | 19 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1aso_B | 0 | 47 | 576 | 19 | 521 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
