| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g026816.1 |
| Family | CE8 |
| Protein Properties | Length: 395 Molecular Weight: 42336.1 Isoelectric Point: 8.9771 |
| Chromosome | Chromosome/Scaffold: 5 Start: 60770473 End: 60771657 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 84 | 386 | 0 |
| VIDPSGNGDYPNITAALDAIPESNTRRVILDLKPGAVFREKLFVNISKPFVTFKSDPANPATVVWNDTAASRSRAAKDGGKPVGTVGSATLAVESDYFTA YGVVLKNDAPLAKPGAKGGQAVALRLFGTKAQVYNCTIDGGQDTLYDHKGLHYFKSCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRTKSIEG AIDTGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYAYTEMGEEVVPVGWDGWEIAKPESSGIYYGEFKCFGPGADAKRKKKRVGWALDLTEQQAKPFVGT HYI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| TMGRRAAAAT TTTKPLLLLL LVVSALLAAA PAAANNAPGG AFSNWIVQNQ QSYALYAQKS 60 AGDGGKEPMD KSLQEAEAKK VTYVIDPSGN GDYPNITAAL DAIPESNTRR VILDLKPGAV 120 FREKLFVNIS KPFVTFKSDP ANPATVVWND TAASRSRAAK DGGKPVGTVG SATLAVESDY 180 FTAYGVVLKN DAPLAKPGAK GGQAVALRLF GTKAQVYNCT IDGGQDTLYD HKGLHYFKSC 240 LIRGSVDFIF GFGRSFYEDC RIESVVKEVA VLTAQQRTKS IEGAIDTGFS FKNCSIGGVK 300 GGQIYLGRAW GDSSRVVYAY TEMGEEVVPV GWDGWEIAKP ESSGIYYGEF KCFGPGADAK 360 RKKKRVGWAL DLTEQQAKPF VGTHYILGDT WLQPP 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 3.0e-79 | 82 | 394 | 323 | + probable pectinesterase | ||
| PLN02634 | PLN02634 | 9.0e-82 | 84 | 394 | 311 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 1.0e-83 | 84 | 393 | 313 | + pectinesterase | ||
| PLN02682 | PLN02682 | 1.0e-103 | 74 | 394 | 325 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 5.0e-107 | 45 | 395 | 352 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF22736.1 | 0 | 15 | 395 | 4 | 379 | pectinesterase family protein [Brachypodium distachyon] |
| GenBank | ACF82787.1 | 0 | 2 | 395 | 1 | 387 | unknown [Zea mays] |
| RefSeq | NP_001068464.1 | 0 | 26 | 395 | 32 | 397 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001144148.1 | 0 | 42 | 395 | 39 | 387 | hypothetical protein LOC100277001 [Zea mays] |
| RefSeq | XP_002451275.1 | 0 | 1 | 395 | 1 | 395 | hypothetical protein SORBIDRAFT_05g026816 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 3e-32 | 84 | 393 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 3e-29 | 84 | 393 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.000000000000001 | 73 | 381 | 23 | 353 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.0000000000005 | 93 | 389 | 18 | 336 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.0000000000005 | 93 | 389 | 18 | 336 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
