| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb05g027690.1 |
| Family | CBM43 |
| Protein Properties | Length: 468 Molecular Weight: 49276.9 Isoelectric Point: 6.5059 |
| Chromosome | Chromosome/Scaffold: 5 Start: 62115880 End: 62120211 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 383 | 464 | 3.6e-33 |
| WCVAKSGASATDLQNNINYACGYIDCKPIQSGGACFDPNNVQSHASYVMNAYYQANGLHDYDCNFKGTGVVTSSDPSYGSCK | |||
| GH17 | 31 | 354 | 0 |
| IGVNYGANADNLPTPAAVASFLAKSTTIDRVKLFDANPAFLDAFAANAPSISLAVSIPNAVLPTFADRSSGLDAARGWVRDNLSPHISAGANVTLLLAGN EVLGPTVVPDLVVALLPAMRRLAQALQLESLPDVRVTTPHYLGILAPSDGIPSNARFRPGLDAKVLAPMLRFHNDTGSPFMVNAYPYFSYNAANLNYAVF RPNAGVYDPGTKLNYTSMFDAQMDAIYTAMKKLGFGDGVEIAVGEAGWPTKAEAAQVGVGVEEAKDFNAGMIRVCSGGKGTPLMPGRKFETYVFSLFDEN QKPGPVAERNFGIFNTDFTPKYDL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 468 Download |
| MLPLLLLLLL AAFLHGTAAA QGQQGLPSLP IGVNYGANAD NLPTPAAVAS FLAKSTTIDR 60 VKLFDANPAF LDAFAANAPS ISLAVSIPNA VLPTFADRSS GLDAARGWVR DNLSPHISAG 120 ANVTLLLAGN EVLGPTVVPD LVVALLPAMR RLAQALQLES LPDVRVTTPH YLGILAPSDG 180 IPSNARFRPG LDAKVLAPML RFHNDTGSPF MVNAYPYFSY NAANLNYAVF RPNAGVYDPG 240 TKLNYTSMFD AQMDAIYTAM KKLGFGDGVE IAVGEAGWPT KAEAAQVGVG VEEAKDFNAG 300 MIRVCSGGKG TPLMPGRKFE TYVFSLFDEN QKPGPVAERN FGIFNTDFTP KYDLGLLRQG 360 SSGSPNPSPK PSPNPSPSGG GKWCVAKSGA SATDLQNNIN YACGYIDCKP IQSGGACFDP 420 NNVQSHASYV MNAYYQANGL HDYDCNFKGT GVVTSSDPSY GSCKYVS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR04105 | FeFe_hydrog_B1 | 0.002 | 250 | 297 | 48 | + [FeFe] hydrogenase, group B1/B3. See PMID:20395274 for descriptions of different groups. | ||
| pfam07983 | X8 | 4.0e-22 | 383 | 452 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-40 | 383 | 465 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-66 | 31 | 354 | 329 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX95270.1 | 0 | 26 | 467 | 31 | 472 | glucan endo-1,3-beta-glucosidase precursor (ec 3.2.1.39) ((1-3)-beta-glucan endohydrolase) ((1-3)-beta-glucanase) (beta-1,3-endoglucanase) [Oryza sativa Japonica Group] |
| GenBank | ACF79258.1 | 0 | 15 | 465 | 12 | 457 | unknown [Zea mays] |
| GenBank | ACG36515.1 | 0 | 21 | 465 | 17 | 458 | glucan endo-1,3-beta-glucosidase precursor [Zea mays] |
| RefSeq | NP_001141385.1 | 0 | 15 | 465 | 12 | 457 | hypothetical protein LOC100273476 [Zea mays] |
| RefSeq | XP_002451320.1 | 0 | 1 | 467 | 1 | 467 | hypothetical protein SORBIDRAFT_05g027690 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 2.00386e-43 | 31 | 354 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 2.00386e-43 | 31 | 354 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3ur8_B | 9.99967e-42 | 30 | 356 | 2 | 314 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3ur8_A | 9.99967e-42 | 30 | 356 | 2 | 314 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3ur7_B | 9.99967e-42 | 30 | 356 | 2 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
