| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g001410.1 |
| Family | PL1 |
| Protein Properties | Length: 382 Molecular Weight: 41008.1 Isoelectric Point: 6.6052 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2049873 End: 2056336 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 171 | 371 | 0 |
| LWIIFKRDMVITLKEELIMNSFKTIDGRGANVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAVSIFGSSHVWVDHCSLS NCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYL A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 382 Download |
| MAAETGSSAA RTRTAGLAAA AAVTALLVLV VVVGSAALPG GRVTVLDGLR GSRADGDADG 60 SASSTPVVAG AVEDPEAVAN DVHVSIRNST ARRNLGYLSC GTGNPIDDCW RCDSDWHNNR 120 QRLADCGIGF GRNAIGGRDG KIYVVTDPSD DDPVNPRKGT LRYAVIQEEP LWIIFKRDMV 180 ITLKEELIMN SFKTIDGRGA NVHIANGACI TIQYITNVII HGLHIHDCKP TGNAMVRSSP 240 SHYGWRTMAD GDAVSIFGSS HVWVDHCSLS NCADGLIDAI MGSTAITVSN NYFTHHNEVM 300 LLGHSDSYVK DKAMQVTIAF NHFGEGLIQR MPRCRHGYFH VVNNDYTHWE MYAIGGSAEP 360 TINSQGNRYL APTNPFAKEV L* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 4.0e-26 | 191 | 375 | 199 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-70 | 184 | 369 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-80 | 178 | 372 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC76710.1 | 0 | 55 | 380 | 76 | 401 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
| GenBank | EEE60442.1 | 0 | 45 | 380 | 37 | 371 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
| RefSeq | NP_001141589.1 | 0 | 42 | 380 | 40 | 394 | hypothetical protein LOC100273705 [Zea mays] |
| RefSeq | NP_001147553.1 | 0 | 50 | 380 | 81 | 408 | pectate lyase 8 [Zea mays] |
| RefSeq | XP_002446075.1 | 0 | 1 | 381 | 1 | 381 | hypothetical protein SORBIDRAFT_06g001410 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 104 | 380 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 104 | 380 | 2 | 279 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 6e-17 | 173 | 370 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000002 | 184 | 369 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1bn8_A | 0.00000000000008 | 194 | 346 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |
