| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g003350.1 |
| Family | GH10 |
| Protein Properties | Length: 575 Molecular Weight: 63272.3 Isoelectric Point: 5.9896 |
| Chromosome | Chromosome/Scaffold: 6 Start: 7345479 End: 7349215 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 219 | 500 | 0 |
| ITRDFPLGSAISKSIIGNKPYQDWFNARFNAAVFENELKWYATEPSPGKEDYAAADQLLQLVQSNDVMARGHNIFWEDPKYTPAWVKNLTGSQLKAAVAG RIESLLSRYKGDFVHWDVSNEMLHFDFYENRLGGNATADFFSTAKRADPLATLFLNDFNVVEACDDLSSSADSYVSRLRQLADAGVTFEGIGLEGHFGKP NIPYVRAVLDKLGTLRLPVWLTEIDISGAFDQRTQAAYLEEVLREGFAHPSVDGIMLWTAMGANASCYQMCLTDANFTNLPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 575 Download |
| MEAAAATALV PPARRQVLIL ALLLLMAASM ARPASSDGVR YDYRAYTECK PHPEPALYNG 60 GVLRWASKIT DFRTEDEGNY SPAFVLYNMS AATAYSFSCW VKIDGPDSAH VKAKILTLEN 120 AASQCIGTAI VRNDCWSFLK GGFILNSPSQ TSVLYFQTAS PNASTISIRS ASLQPFSPDQ 180 WNQHREDRIQ LIRKRFVNVH VSDGNGSRVV GANVAVHQIT RDFPLGSAIS KSIIGNKPYQ 240 DWFNARFNAA VFENELKWYA TEPSPGKEDY AAADQLLQLV QSNDVMARGH NIFWEDPKYT 300 PAWVKNLTGS QLKAAVAGRI ESLLSRYKGD FVHWDVSNEM LHFDFYENRL GGNATADFFS 360 TAKRADPLAT LFLNDFNVVE ACDDLSSSAD SYVSRLRQLA DAGVTFEGIG LEGHFGKPNI 420 PYVRAVLDKL GTLRLPVWLT EIDISGAFDQ RTQAAYLEEV LREGFAHPSV DGIMLWTAMG 480 ANASCYQMCL TDANFTNLPA GDVVDRLLGE WQTKEVLGAT NDRGSFNFSA FLGEYRLSVT 540 YLNRTADATF SLARSDDTKH INIRLPAPGS PAAA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 8.0e-32 | 207 | 476 | 294 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 4.0e-55 | 222 | 476 | 271 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-71 | 256 | 504 | 269 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC78941.1 | 0 | 64 | 565 | 21 | 522 | hypothetical protein OsI_19385 [Oryza sativa Indica Group] |
| GenBank | EEE63172.1 | 0 | 64 | 565 | 21 | 522 | hypothetical protein OsJ_17981 [Oryza sativa Japonica Group] |
| RefSeq | NP_001055145.1 | 0 | 100 | 565 | 11 | 476 | Os05g0304900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152556.1 | 0 | 37 | 573 | 36 | 571 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
| RefSeq | XP_002446197.1 | 0 | 1 | 574 | 1 | 574 | hypothetical protein SORBIDRAFT_06g003350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 4e-29 | 243 | 508 | 36 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1nq6_A | 1e-27 | 225 | 504 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1k6a_A | 2e-27 | 243 | 500 | 36 | 293 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1gor_A | 2e-27 | 243 | 500 | 36 | 293 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1goq_A | 2e-27 | 243 | 500 | 36 | 293 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
