| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g016510.1 |
| Family | GH19 |
| Protein Properties | Length: 274 Molecular Weight: 28749.2 Isoelectric Point: 6.0965 |
| Chromosome | Chromosome/Scaffold: 6 Start: 45300954 End: 45301775 |
| Description | basic chitinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH19 | 26 | 265 | 0 |
| VASIISESLFNQMLLHRNKPACPASGFYTYSAFVAAANSFPGFGTTGSPDAQKREVAAFLAQTSHETTGGWASAPDGPYAWGYCYKEEKDAAASAPEAYC RPSALWPCAAGKKYYGRGPIQISYNYNYGPAGEAIGAAGILDDPDLVATDATVSFETAVWFWMTPQPPKPSCHAVVTGQWAPSPADTAAGRLPGYGVVTN IINGGLECGHGADSRVADRIGFYKRYCDLLGVSYGNNVDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 274 Download |
| MMRAPAAVMA MVAIFAMSTS TAGGSVASII SESLFNQMLL HRNKPACPAS GFYTYSAFVA 60 AANSFPGFGT TGSPDAQKRE VAAFLAQTSH ETTGGWASAP DGPYAWGYCY KEEKDAAASA 120 PEAYCRPSAL WPCAAGKKYY GRGPIQISYN YNYGPAGEAI GAAGILDDPD LVATDATVSF 180 ETAVWFWMTP QPPKPSCHAV VTGQWAPSPA DTAAGRLPGY GVVTNIINGG LECGHGADSR 240 VADRIGFYKR YCDLLGVSYG NNVDCANQRP FNS* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00442 | lysozyme_like | 9.0e-12 | 82 | 227 | 146 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
| cd00325 | chitinase_glyco_hydro_19 | 1.0e-132 | 30 | 265 | 236 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
| pfam00182 | Glyco_hydro_19 | 3.0e-138 | 29 | 265 | 237 | + Chitinase class I. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004568 | chitinase activity |
| GO:0006032 | chitin catabolic process |
| GO:0016998 | cell wall macromolecule catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT40015.1 | 0 | 24 | 272 | 75 | 320 | chitinase [Zea mays subsp. parviglumis] |
| GenBank | AAT40016.1 | 0 | 24 | 272 | 76 | 321 | chitinase [Zea mays subsp. parviglumis] |
| GenBank | AAT40017.1 | 0 | 22 | 272 | 73 | 320 | chitinase [Zea mays subsp. parviglumis] |
| GenBank | AAT40019.1 | 0 | 24 | 272 | 77 | 322 | chitinase [Zea mays subsp. parviglumis] |
| RefSeq | XP_002447824.1 | 0 | 1 | 273 | 1 | 273 | hypothetical protein SORBIDRAFT_06g016510 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dyg_B | 0 | 25 | 271 | 2 | 243 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 4dyg_A | 0 | 25 | 271 | 2 | 243 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 4dwx_B | 0 | 25 | 271 | 2 | 243 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
| PDB | 4dwx_A | 0 | 25 | 271 | 2 | 243 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
| PDB | 2baa_A | 0 | 25 | 271 | 1 | 242 | A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
| chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
| chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
| chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
