| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g017280.1 |
| Family | CE8 |
| Protein Properties | Length: 469 Molecular Weight: 50735.6 Isoelectric Point: 8.8831 |
| Chromosome | Chromosome/Scaffold: 6 Start: 46531487 End: 46532893 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 169 | 462 | 0 |
| CGYSTVQAAVDAAPNYTAGHFVIAVAAGTYKENIVIPYEKTNILLMGEGMGATVITASRSVGIDGLGTHETATVAVIGDGFRARDITFENSAGARAHQAV AFRSDSDRSVLENVEFRGHQDTLYAHTMRQFYRRCHITGTVDFIFGNAAAVFEECVIKTVPRAEGAQKRARNVVAASGRIDPGQTTGFVFVNCTVDGNKE FVELFRTKPQSYRLYLGRPWKEYARTLYVSCYLGTVVRPEGWLPWRGDFALRTLYYGEFDSRGPGANNTARVEWSSQTPEQHVKHFSKENFIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 469 Download |
| MPRAHHHPPP RRGRLLQLAA AASGLLLLAL LVLLPAAPPG EHTTAPASLL RAAVAAHPSP 60 ASYARPCADH LALSLHRLRA ALSSLESGDV PAALHLASGS LQCQYDCSHL LSLPAFRSHL 120 LTSRFLDSLA PQTLNAALKP PSSAPAAAFP ARIRPDATVC KPNSGAEPCG YSTVQAAVDA 180 APNYTAGHFV IAVAAGTYKE NIVIPYEKTN ILLMGEGMGA TVITASRSVG IDGLGTHETA 240 TVAVIGDGFR ARDITFENSA GARAHQAVAF RSDSDRSVLE NVEFRGHQDT LYAHTMRQFY 300 RRCHITGTVD FIFGNAAAVF EECVIKTVPR AEGAQKRARN VVAASGRIDP GQTTGFVFVN 360 CTVDGNKEFV ELFRTKPQSY RLYLGRPWKE YARTLYVSCY LGTVVRPEGW LPWRGDFALR 420 TLYYGEFDSR GPGANNTARV EWSSQTPEQH VKHFSKENFI QGHQWIAY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02713 | PLN02713 | 2.0e-97 | 171 | 466 | 305 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 4.0e-100 | 158 | 466 | 312 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 6.0e-103 | 171 | 466 | 303 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-133 | 158 | 462 | 308 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 2.0e-155 | 158 | 466 | 310 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAE02750.2 | 0 | 43 | 468 | 50 | 480 | OSJNBa0006B20.19 [Oryza sativa (japonica cultivar-group)] |
| EMBL | CAH67582.1 | 0 | 43 | 468 | 48 | 478 | H0315A08.12 [Oryza sativa (indica cultivar-group)] |
| GenBank | EAY94221.1 | 0 | 43 | 468 | 50 | 480 | hypothetical protein OsI_15995 [Oryza sativa Indica Group] |
| RefSeq | NP_001140854.1 | 0 | 1 | 468 | 1 | 471 | hypothetical protein LOC100272930 [Zea mays] |
| RefSeq | XP_002446513.1 | 0 | 1 | 468 | 1 | 468 | hypothetical protein SORBIDRAFT_06g017280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 153 | 466 | 1 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 153 | 466 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 2e-16 | 156 | 388 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-16 | 156 | 388 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-16 | 156 | 388 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
