y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb06g018850.1 |
Family | CE8 |
Protein Properties | Length: 564 Molecular Weight: 61799.9 Isoelectric Point: 9.4577 |
Chromosome | Chromosome/Scaffold: 6 Start: 48489475 End: 48491259 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 252 | 546 | 0 |
AVVAKDGSGQFKSIQQAVDAMPKGQQGRYVIYVKAGVYDEIVMIAKDKVNIFMYGDGPKNTRVTGQKSFADGITTMKTATFSIEAAGFICKNMGFHNTAG AAKHQAVALRVQGDLAAFYNCRFDAFQDTLYVHARRQFFRNCVISGTIDFIFGNSAAVFQNCLIITRRPMDNQQNSVTAHGRTDPNMKSGIVIQNCRLVP DQKLFADRFKIPSYLGRPWKEFSRLVIMESTIADFIKPEGYMPWNGDFGIKTLFYAEYNNRGPGAGTSKRVNWPGFHVITRKDAEQFTAGPFIDG |
Full Sequence |
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Protein Sequence Length: 564 Download |
MAKALLGGLS AILVVAVVVG VVATVTRSGK KAGDNFNVPG DASLATSGKS VKSLCAPTLY 60 KDSCEKTLSQ ATNGTENPKE IFHSVAKVAL ESVKTAVEQS KNIGEAKASD KMTESAREDC 120 KKLLEDAVDD LRGMLDMAGG DIKVLFSRSD DLETWLTGVM TFMDTCIDGF VDEKLRADMH 180 SVLRNATELS SNALAITNSL GGILKKLDLD MFKKDSRRRL LSSEQDEKGW PVWMRSPERK 240 LLAAGNQPKP NAVVAKDGSG QFKSIQQAVD AMPKGQQGRY VIYVKAGVYD EIVMIAKDKV 300 NIFMYGDGPK NTRVTGQKSF ADGITTMKTA TFSIEAAGFI CKNMGFHNTA GAAKHQAVAL 360 RVQGDLAAFY NCRFDAFQDT LYVHARRQFF RNCVISGTID FIFGNSAAVF QNCLIITRRP 420 MDNQQNSVTA HGRTDPNMKS GIVIQNCRLV PDQKLFADRF KIPSYLGRPW KEFSRLVIME 480 STIADFIKPE GYMPWNGDFG IKTLFYAEYN NRGPGAGTSK RVNWPGFHVI TRKDAEQFTA 540 GPFIDGALWL KFTGTPHILG FKS* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02990 | PLN02990 | 3.0e-155 | 44 | 562 | 528 | + Probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 2.0e-164 | 30 | 556 | 542 | + pectinesterase | ||
PLN02468 | PLN02468 | 4.0e-179 | 50 | 561 | 515 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02745 | PLN02745 | 0 | 48 | 560 | 523 | + Putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 251 | 546 | 297 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF79975.1 | 0 | 27 | 562 | 27 | 562 | unknown [Zea mays] |
GenBank | EAY94388.1 | 0 | 27 | 562 | 28 | 567 | hypothetical protein OsI_16156 [Oryza sativa Indica Group] |
GenBank | EAY94391.1 | 0 | 27 | 562 | 28 | 567 | hypothetical protein OsI_16158 [Oryza sativa Indica Group] |
RefSeq | NP_001052981.1 | 0 | 27 | 562 | 28 | 567 | Os04g0458900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002447958.1 | 0 | 27 | 563 | 27 | 563 | hypothetical protein SORBIDRAFT_06g018850 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 250 | 561 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 251 | 561 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 9e-26 | 251 | 470 | 5 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 9e-26 | 251 | 470 | 5 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 9e-26 | 251 | 470 | 5 | 245 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |