| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g023450.1 |
| Family | GH3 |
| Protein Properties | Length: 767 Molecular Weight: 83005.4 Isoelectric Point: 6.4549 |
| Chromosome | Chromosome/Scaffold: 6 Start: 52589430 End: 52593155 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 69 | 317 | 0 |
| GVPRLGIPPYQWWSESLHGLADNGPGVNFSSGPVRAATTFPQVILSTAAFNRSLWRAVAEAVATEALGMHNAGQAGLTYWAPNINIFRDPRWGRGQETSG EDPAVAAAYSLEYVKGFQGEQGEEGRIRLSACCKHYTAYDMEKWEGFSRYTFNAKVNAQDLEDTYQPPFKTCIQEARASCLMCAYNQVNGVPMCANKDLL QKTRDEWGFQGYITSDCDAVAIIHENQTYTKSDEDSIAIVLKAGMDINC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 767 Download |
| MPLALLLCLL ACGAAGAAAT ARPCASPYSG SSAYPFCDAS LSIPARARAL VSLLTLDEKI 60 AQLSNTAGGV PRLGIPPYQW WSESLHGLAD NGPGVNFSSG PVRAATTFPQ VILSTAAFNR 120 SLWRAVAEAV ATEALGMHNA GQAGLTYWAP NINIFRDPRW GRGQETSGED PAVAAAYSLE 180 YVKGFQGEQG EEGRIRLSAC CKHYTAYDME KWEGFSRYTF NAKVNAQDLE DTYQPPFKTC 240 IQEARASCLM CAYNQVNGVP MCANKDLLQK TRDEWGFQGY ITSDCDAVAI IHENQTYTKS 300 DEDSIAIVLK AGMDINCGSF LVRHTKSAVE KGKVQEQDID RALFNLFSVQ LRLGIFDKPN 360 NNQWSTQLGP NNVCTKEHRE LAAEAVRQGA VLLKNDHSFL PLKRSEVRHV AIIGPSANDV 420 YAMGGDYTGV ACNPTTFLKG IQAYATQTTF AAGCKDVSCN STELFGEAIA AAKRADIVVV 480 VAGLNLTEER EDFDRVSLLL PGKQMSLIHA VASVAKKPLV LVLLGGGPVD VSFAKQDPRI 540 ASILWLGYPG EVGGQVLPEI LFGEYNPGGK LAMTWYPESF TAIPMTDMNM RADPSRGYPG 600 RTYRFYTGDV VYGFGYGLSY SKYSYSILSA PKKITMSRSS VLDIISRKPS YIRRDGLDFV 660 KTEDIASCEA LAFSVHVAVS NHGSMDGSHA VLLFARSKSS VPGFPIKQLV GFERVHTAAG 720 SASNVEISVD PCKHMSAANP EGKRVLLLGD HVLTVGDEEF ELFIEL* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01915 | Glyco_hydro_3_C | 9.0e-42 | 390 | 577 | 193 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| COG1472 | BglX | 5.0e-52 | 71 | 428 | 365 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| PRK15098 | PRK15098 | 8.0e-54 | 106 | 762 | 712 | + beta-D-glucoside glucohydrolase; Provisional | ||
| pfam00933 | Glyco_hydro_3 | 5.0e-58 | 55 | 342 | 320 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PLN03080 | PLN03080 | 0 | 21 | 766 | 753 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN26462.1 | 0 | 137 | 766 | 1 | 630 | unknown [Zea mays] |
| EMBL | CAJ86207.1 | 0 | 20 | 765 | 26 | 737 | B1011H02.4 [Oryza sativa (indica cultivar-group)] |
| GenBank | EEE61389.1 | 0 | 21 | 765 | 27 | 770 | hypothetical protein OsJ_15562 [Oryza sativa Japonica Group] |
| RefSeq | NP_001053392.1 | 0 | 20 | 765 | 26 | 769 | Os04g0530700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002448225.1 | 0 | 1 | 766 | 1 | 766 | hypothetical protein SORBIDRAFT_06g023450 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 148 | 762 | 128 | 728 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u48_A | 0 | 148 | 762 | 128 | 728 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u4a_B | 0 | 148 | 762 | 128 | 728 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u4a_A | 0 | 148 | 762 | 128 | 728 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 1j8v_A | 1e-35 | 36 | 594 | 5 | 589 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
