y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb06g024730.1 |
Family | CE8 |
Protein Properties | Length: 351 Molecular Weight: 38553.6 Isoelectric Point: 8.9224 |
Chromosome | Chromosome/Scaffold: 6 Start: 53782191 End: 53784465 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 50 | 341 | 0 |
IVVDASGAGDFVSIQQAVDSVPEGNTMRVIMQINAGTYIEKVVVPASKPYVTFQGAGRDVTVVEWHDRASDRGPDGKPLRTYNTASVTILANYFNAKNIS FKNTAPAPMPGTQGGQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIQGSIDFVFGNARSLYKDCELHSTAQRFGSVAAHGRHDPCERTGFA FVNCRVTGTGRLYVGRAMGQYSRIVYAYTYFDSVIAPGGWDDWDHTSNKSMTAFFGMYRNWGPGVDAVHGVSWARELDYFAARPFLGKSFVN |
Full Sequence |
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Protein Sequence Length: 351 Download |
MALARILLLL LVTVASLLPP IASQQAAATK CEYRKHSGHR YRHPVGVRKI VVDASGAGDF 60 VSIQQAVDSV PEGNTMRVIM QINAGTYIEK VVVPASKPYV TFQGAGRDVT VVEWHDRASD 120 RGPDGKPLRT YNTASVTILA NYFNAKNISF KNTAPAPMPG TQGGQAVAFR ISGDKAFFFG 180 CGFYGAQDTL CDDAGRHYFR DCYIQGSIDF VFGNARSLYK DCELHSTAQR FGSVAAHGRH 240 DPCERTGFAF VNCRVTGTGR LYVGRAMGQY SRIVYAYTYF DSVIAPGGWD DWDHTSNKSM 300 TAFFGMYRNW GPGVDAVHGV SWARELDYFA ARPFLGKSFV NGYHWLTPDV * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 8.0e-105 | 47 | 348 | 304 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 2.0e-107 | 50 | 348 | 309 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-116 | 46 | 346 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-139 | 48 | 348 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 19 | 348 | 330 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL53825.1 | 0 | 25 | 350 | 24 | 349 | unknown [Zea mays] |
EMBL | CAD41229.2 | 0 | 7 | 350 | 1 | 344 | OSJNBa0010H02.16 [Oryza sativa (japonica cultivar-group)] |
EMBL | CBI31927.1 | 0 | 1 | 348 | 1 | 346 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 39 | 348 | 5 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002448293.1 | 0 | 1 | 350 | 1 | 350 | hypothetical protein SORBIDRAFT_06g024730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 49 | 346 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-36 | 51 | 346 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-18 | 51 | 256 | 34 | 253 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-17 | 60 | 226 | 18 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-17 | 60 | 226 | 18 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |