y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb06g025345.1 |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 42817 Isoelectric Point: 9.1768 |
Chromosome | Chromosome/Scaffold: 6 Start: 54279896 End: 54283955 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 394 | 0 |
AACGAKGPSAVMVVPAQRTFLVGPVSFQGPCASQRVTVQIQGTIMAPPSTAASAWRNGTNLYWLMFDRVDGLRVTGNGVLDGSGQSWWVRRCHSDANLFV SVAWQALKLVSCNNLELSQFSSRNSPQMHIAIVESSGVNVWGLNIAAPGNSPNTDGVHVERSHGVQITNSTIGTGDDCVSISSGSRFVTVDGIQCGPGHG VSIGSLGKNGEIAAVEYIDVKNVYFTNTMNGARIKTWEGAQGYARSISFTDIEFDNVDHPIIIDQFYRDHTAEVRSLQLAVAISNVTYTNLKGTSALPTA VAFDCGAGAGAGGSCTDIHVNSVMITRSGGQQTVARCRNAKVSI |
Full Sequence |
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Protein Sequence Length: 400 Download |
TRKASSWPWR RRQRPRRSRC RSHRRTNVVA HGARGDGSTD DTKAFEAAWN AACGAKGPSA 60 VMVVPAQRTF LVGPVSFQGP CASQRVTVQI QGTIMAPPST AASAWRNGTN LYWLMFDRVD 120 GLRVTGNGVL DGSGQSWWVR RCHSDANLFV SVAWQALKLV SCNNLELSQF SSRNSPQMHI 180 AIVESSGVNV WGLNIAAPGN SPNTDGVHVE RSHGVQITNS TIGTGDDCVS ISSGSRFVTV 240 DGIQCGPGHG VSIGSLGKNG EIAAVEYIDV KNVYFTNTMN GARIKTWEGA QGYARSISFT 300 DIEFDNVDHP IIIDQFYRDH TAEVRSLQLA VAISNVTYTN LKGTSALPTA VAFDCGAGAG 360 AGGSCTDIHV NSVMITRSGG QQTVARCRNA KVSISGQVYP 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 9.0e-85 | 27 | 400 | 376 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-87 | 27 | 391 | 372 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-89 | 27 | 400 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-97 | 27 | 389 | 363 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-98 | 32 | 400 | 369 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK81876.1 | 0 | 1 | 400 | 53 | 441 | polygalacturonase PG1 [Vitis vinifera] |
DDBJ | BAC57279.1 | 0 | 27 | 400 | 54 | 420 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
EMBL | CBI29907.1 | 0 | 1 | 400 | 42 | 439 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282759.1 | 0 | 1 | 400 | 42 | 439 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002448332.1 | 0 | 1 | 400 | 1 | 400 | hypothetical protein SORBIDRAFT_06g025345 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-20 | 124 | 318 | 113 | 315 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-17 | 129 | 389 | 79 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-17 | 129 | 389 | 79 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-17 | 129 | 389 | 79 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-17 | 129 | 389 | 79 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO597051 | 224 | 65 | 287 | 0 |
GO596993 | 223 | 65 | 286 | 0 |
CJ572403 | 202 | 199 | 400 | 0 |
BJ236635 | 209 | 112 | 317 | 0 |
BF473363 | 182 | 112 | 291 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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