| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g028225.1 |
| Family | CBM43 |
| Protein Properties | Length: 416 Molecular Weight: 39271.8 Isoelectric Point: 4.6326 |
| Chromosome | Chromosome/Scaffold: 6 Start: 57059592 End: 57060983 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 340 | 416 | 6.8e-31 |
| WCVAKPTVPDPIIQEAMDYACGSGAECDSILPSGACYRPNTVLAHASFAFNSYWQQAKATGGTCDFGGTATIVTRDP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 416 Download |
| MARSKDRVPL VSAGFAVASL LLLLCATRCE ARAMAVRRLR STSRSSSSPL LNALFKLNFI 60 RTVEPPRRLP TPTADAADAA SLAAGDTTNS PFCVNPPDAP PSTSSTPFTP SFPGLTPPLP 120 PITPVPPSFE PSPPENGAPS GGQGQGGGQG QGGGQGQGGG QGQGGGGGDQ GQGGGQGQGG 180 GQGQGGGGGD QGQGGGGGDQ GQGGGQGQGG GGGDQGQGGG QGQGGGGGDQ GQGGGQGQGG 240 GGQGQEGPPA STTPNSPPQV GPGTPFGSVP PSPIVVVPSP PGFGPGPGSG SGSGGGGSGS 300 GGGGSGGGGG GGGGGPFQPP IVYPPPLAPP MPPGAGQTLW CVAKPTVPDP IIQEAMDYAC 360 GSGAECDSIL PSGACYRPNT VLAHASFAFN SYWQQAKATG GTCDFGGTAT IVTRDP 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 8.0e-25 | 339 | 410 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-34 | 339 | 416 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80478.2 | 2.8026e-45 | 337 | 416 | 292 | 371 | unknown [Zea mays] |
| RefSeq | NP_001141530.1 | 7e-33 | 1 | 99 | 1 | 93 | hypothetical protein LOC100273642 [Zea mays] |
| RefSeq | NP_001141530.1 | 0 | 250 | 416 | 171 | 318 | hypothetical protein LOC100273642 [Zea mays] |
| RefSeq | XP_002448511.1 | 1.96182e-44 | 1 | 114 | 1 | 114 | hypothetical protein SORBIDRAFT_06g028225 [Sorghum bicolor] |
| RefSeq | XP_002448511.1 | 0 | 248 | 416 | 248 | 416 | hypothetical protein SORBIDRAFT_06g028225 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 2e-16 | 330 | 416 | 5 | 89 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
