| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g029050.1 |
| Family | CBM53 |
| Protein Properties | Length: 1174 Molecular Weight: 132113 Isoelectric Point: 5.1171 |
| Chromosome | Chromosome/Scaffold: 6 Start: 57749902 End: 57758067 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 309 | 392 | 5.1e-31 |
| SVIDLYLNRSMSALASESNVFVKGAFNGWRWNAFTETLHKSELRGDWWCCKLYIPKQAYRLDFVFFNGDSVYENNNHNDFFLEI | |||
| CBM53 | 645 | 733 | 1.3e-34 |
| GTTVDVLYNPSNTVLNGKPEVWFRGSFNRWTHPSGPLPPQKMVKTENGSHLRTTVRVPLDAYMMDFVFSESEEGGIYDNRNGIDYHIPV | |||
| CBM53 | 483 | 573 | 1.1e-35 |
| GDRVRLYYNRSSRPLMHNTEIWMHGGYNNWIDGLSIAEKLVKSHEKEGDWWYAEVTLPERALVLNWVFADGPPGNARNYDNNGRQDFHAIV | |||
| GT5 | 744 | 1168 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVEVILPKYDCLNLSSVKDLHYQQSFTWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDE SRFGFFCHSALEFLLQKGSSPEQYALNGLGNGRIVFTIHNLEFGAHHIGKAMTHCDKATTVSDTYSKEVAGHGAIAPHYYKFHGIRNGIDPDIWDPYTDK YIPVHYTSENVIEGKSAAKKALQQMLGLQQTDTPVVGIITRLTVQKGIHLIKHAIYRALERNGQVVLLGSAPDPRIQGDFTNLASRLHNEYHGRVKLCLT YDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDNDKDRAQAQGLEPNGFSFEGADSSGVDYALDRAITTFYDARDWFN SLCKRVMEQDWSWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1174 Download |
| MEMNLRAQSP LCSRGRPALV VRPAAAATGL TLSVMRCSRF TRGELVRCMV SSSDYPKRNP 60 RRTSTSKSKG VASGGYASRP TAESSTKKIE QSSNDEGDFS RANGSLYGEA TEKASTAEES 120 SQVYFPEDNS SSAERDEAGT EEEADQNQSS VLSSASMDDD SIDRKLDEYR GKISALVSSK 180 PEPSWPASVA GQSESVGGVH GQDGPIIGSE DHDSSTVDAP IKGRPFAEAV VGYKDFTESA 240 AGKATIENEK EQTVSLEDVV GINTDAEEEL SVSEDDPEVL LRRFQELADE NDSIGNNCFV 300 FPEVVKADSV IDLYLNRSMS ALASESNVFV KGAFNGWRWN AFTETLHKSE LRGDWWCCKL 360 YIPKQAYRLD FVFFNGDSVY ENNNHNDFFL EIESDIDEHS FDDFLVEEKQ KELERLDAEE 420 AERKRQAEEE RRRAEERAAM EADRAQAKSE VEKKKEKLRQ MLSSASRYAD NLWYIEPNTY 480 RGGDRVRLYY NRSSRPLMHN TEIWMHGGYN NWIDGLSIAE KLVKSHEKEG DWWYAEVTLP 540 ERALVLNWVF ADGPPGNARN YDNNGRQDFH AIVPNNISDD IFWVDEEHRI FTRLQQERRE 600 REGAERIKAE ISAKMKAEMK EKTMRAFLLS QKHIVYTEPL EVRAGTTVDV LYNPSNTVLN 660 GKPEVWFRGS FNRWTHPSGP LPPQKMVKTE NGSHLRTTVR VPLDAYMMDF VFSESEEGGI 720 YDNRNGIDYH IPVSDSVARE PPMHIVHIAV EMAPIAKVGG LGDVVTSLSR AVQDLGHKVE 780 VILPKYDCLN LSSVKDLHYQ QSFTWGGTEI KVWFGKVEDL PVYFLEPQNG MFWVGCVYGK 840 NDESRFGFFC HSALEFLLQK GSSPEQYALN GLGNGRIVFT IHNLEFGAHH IGKAMTHCDK 900 ATTVSDTYSK EVAGHGAIAP HYYKFHGIRN GIDPDIWDPY TDKYIPVHYT SENVIEGKSA 960 AKKALQQMLG LQQTDTPVVG IITRLTVQKG IHLIKHAIYR ALERNGQVVL LGSAPDPRIQ 1020 GDFTNLASRL HNEYHGRVKL CLTYDEPLSH LIYAGADFIL VPSIFEPCGL TQLIAMRYGS 1080 IPIVRKTGGL YDTVFDVDND KDRAQAQGLE PNGFSFEGAD SSGVDYALDR AITTFYDARD 1140 WFNSLCKRVM EQDWSWNRPA LDYMELYHSA RKN* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 1.0e-23 | 63 | 167 | 118 | + synthase/transferase | ||
| TIGR02095 | glgA | 3.0e-143 | 743 | 1170 | 487 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 6.0e-154 | 743 | 1173 | 486 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-158 | 744 | 1169 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 209 | 1172 | 988 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86847.1 | 0 | 1 | 1173 | 1 | 1191 | starch synthase IIIb precursor [Sorghum bicolor] |
| GenBank | ACY56216.1 | 0 | 1 | 1173 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Japonica Group] |
| RefSeq | NP_001106015.1 | 0 | 1 | 1173 | 1 | 1191 | starch synthase IIIb-1 precursor [Zea mays] |
| RefSeq | NP_001106016.1 | 0 | 1 | 1173 | 1 | 1188 | starch synthase IIIb-2 precursor [Zea mays] |
| RefSeq | XP_002448557.1 | 0 | 1 | 1173 | 1 | 1173 | hypothetical protein SORBIDRAFT_06g029050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 743 | 1168 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 743 | 1168 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 743 | 1168 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 743 | 1168 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 743 | 1168 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 567 | 625 | 1172 | 0 |
| HO778003 | 697 | 282 | 959 | 0 |
| GT033751 | 342 | 794 | 1117 | 0 |
| HO778003 | 343 | 244 | 573 | 0.00000000000009 |
| HO794758 | 130 | 450 | 577 | 2 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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