y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb06g030270.1 |
Family | GH3 |
Protein Properties | Length: 768 Molecular Weight: 80905.6 Isoelectric Point: 6.4107 |
Chromosome | Chromosome/Scaffold: 6 Start: 58684478 End: 58692005 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 81 | 329 | 0 |
ALPRLGIPLYEWWSEALHGVSYVGPGTRFSSLVPAATSFPQPILTAASFNATLFRAIGEVVSNEARAMHNVGLAGLTFWSPNINIFRDPRWGRGQETPGE DPLLTSKYAVGYVTGLQDAGSGSGSLKVAACCKHYTAYDVDNWKGVERYTFNAVVSQQDLDDTFQPPFKSCVVDGNVASVMCSYNQVNGKPTCADKDLLS GVIRGDWKLNGYISSDCDSVDVLYNNQHYTKTPEDAAAISIKAGLDLNC |
Full Sequence |
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Protein Sequence Length: 768 Download |
MAAAFPASAA LAAVAVVALL LCSCNVARAQ TPVFACDASN ATLASYGFCN RSASASARAA 60 DLVSRLTLAE KVGFLVDKQA ALPRLGIPLY EWWSEALHGV SYVGPGTRFS SLVPAATSFP 120 QPILTAASFN ATLFRAIGEV VSNEARAMHN VGLAGLTFWS PNINIFRDPR WGRGQETPGE 180 DPLLTSKYAV GYVTGLQDAG SGSGSLKVAA CCKHYTAYDV DNWKGVERYT FNAVVSQQDL 240 DDTFQPPFKS CVVDGNVASV MCSYNQVNGK PTCADKDLLS GVIRGDWKLN GYISSDCDSV 300 DVLYNNQHYT KTPEDAAAIS IKAGLDLNCG NFLAQHTVAA VQAGKLSESD VDRAITNNFI 360 TLMRLGFFDG DPRKLPFGNL GPSDVCTSSN QELAREAARQ GIVLLKNSGA LPLSASSIKS 420 LAVIGPNANA SFTMIGNYEG TPCKYTTPLQ GLGANVATVY QPGCTNVGCS GNSLQLDAAT 480 KAAASADVTV LVVGADQSIE RESLDRTSLL LPGQQPQLVS AVANASRGPC ILVIMSGGPF 540 DISFAKSSDK IAAILWVGYP GEAGGAAIAD VLFGHHNPSG RLPVTWYPES FTKVPMIDMR 600 MRPDASTGYP GRTYRFYTGD TVYAFGDGLS YTSFAHHLVS APKQVALQLA EGHTCLTEQC 660 PSVEAEGAHC EGLAFDVHLR VRNAGDMSGA HTVFLFSSPP AVHNAPAKHL LGFEKVSLEP 720 GQAGVVAFKV DVCKDLSVVD ELGNRKVALG NHTLHVGDLK HTLSLGV* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-55 | 402 | 632 | 240 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 6.0e-57 | 78 | 465 | 397 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 1.0e-65 | 80 | 357 | 282 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 7.0e-81 | 77 | 732 | 702 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 32 | 765 | 754 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK38481.1 | 0 | 27 | 767 | 32 | 777 | alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I [Hordeum vulgare] |
EMBL | CAE03635.1 | 0 | 131 | 767 | 202 | 839 | OSJNBb0003B01.27 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEE61783.1 | 0 | 25 | 767 | 22 | 771 | hypothetical protein OsJ_16354 [Oryza sativa Japonica Group] |
RefSeq | NP_001054038.1 | 0 | 25 | 767 | 22 | 765 | Os04g0640700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002448619.1 | 0 | 23 | 767 | 23 | 767 | hypothetical protein SORBIDRAFT_06g030270 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 84 | 730 | 74 | 696 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3u48_A | 0 | 84 | 730 | 74 | 696 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3u4a_B | 0 | 84 | 730 | 74 | 696 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3u4a_A | 0 | 84 | 730 | 74 | 696 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 2x41_A | 6.00036e-42 | 58 | 766 | 3 | 714 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |