| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb06g033250.1 |
| Family | CBM43 |
| Protein Properties | Length: 465 Molecular Weight: 49637.4 Isoelectric Point: 4.993 |
| Chromosome | Chromosome/Scaffold: 6 Start: 61251463 End: 61253192 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 379 | 462 | 1.2e-31 |
| WCVPKPAADEMVLQENIDFACGQEGVDCAAIRPGGVCYEPDTVQGHAAYAMNLYFQSNGHHAYDCDFGQTGVVTTADPSYGGCK | |||
| GH17 | 31 | 347 | 0 |
| IGVNYGTRGTTLPAPTDVARFLARDTIVDRVRLLDADPVLLQAFAGTGLAVDVTVPNGVVPRLVSLAFARRWVRDNVAPYAGATNISRLLVGDEVTTEAN RTLLLALVPAMQNLHTALVAASLHGRVKVSTTHSLGVLTTTEQPSSARFRDGYDTAIVRPMLRFLRATGAPFMVNAYPFYGLTNDTISLDFALFRVNDGV MDRGSGLVYGNMLDAQLDAVHSAVRRLGFGDVDIVVSETGWPSAGEDWEVGVGADLAREYNKNAIRHLGSGVGTPLMPNRTFEVSIFSLFDENLKPGPVS ERNFGLFRGDMTPVYDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 465 Download |
| MTRCTVLLQI LLPTLLLVSA ITFTGADAGG IGVNYGTRGT TLPAPTDVAR FLARDTIVDR 60 VRLLDADPVL LQAFAGTGLA VDVTVPNGVV PRLVSLAFAR RWVRDNVAPY AGATNISRLL 120 VGDEVTTEAN RTLLLALVPA MQNLHTALVA ASLHGRVKVS TTHSLGVLTT TEQPSSARFR 180 DGYDTAIVRP MLRFLRATGA PFMVNAYPFY GLTNDTISLD FALFRVNDGV MDRGSGLVYG 240 NMLDAQLDAV HSAVRRLGFG DVDIVVSETG WPSAGEDWEV GVGADLAREY NKNAIRHLGS 300 GVGTPLMPNR TFEVSIFSLF DENLKPGPVS ERNFGLFRGD MTPVYDVGIF TDPETLEPVS 360 AKVTPAPSSP GAAGGRRQWC VPKPAADEMV LQENIDFACG QEGVDCAAIR PGGVCYEPDT 420 VQGHAAYAMN LYFQSNGHHA YDCDFGQTGV VTTADPSYGG CKFM* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 9.0e-22 | 378 | 450 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-42 | 378 | 463 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-90 | 31 | 347 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAJ86292.1 | 0 | 18 | 463 | 765 | 1215 | H0124B04.9 [Oryza sativa (indica cultivar-group)] |
| GenBank | EEC78268.1 | 0 | 18 | 463 | 461 | 911 | hypothetical protein OsI_17962 [Oryza sativa Indica Group] |
| GenBank | EEE61922.1 | 0 | 18 | 463 | 461 | 891 | hypothetical protein OsJ_16662 [Oryza sativa Japonica Group] |
| RefSeq | NP_001151529.1 | 0 | 1 | 464 | 1 | 450 | LOC100285163 [Zea mays] |
| RefSeq | XP_002448791.1 | 0 | 1 | 464 | 1 | 464 | hypothetical protein SORBIDRAFT_06g033250 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 31 | 347 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_B | 0 | 31 | 349 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur8_A | 0 | 31 | 349 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3ur7_B | 0 | 31 | 349 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 31 | 349 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
