| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g000490.1 |
| Family | AA7 |
| Protein Properties | Length: 514 Molecular Weight: 57022.5 Isoelectric Point: 8.4016 |
| Chromosome | Chromosome/Scaffold: 7 Start: 301901 End: 303986 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 52 | 505 | 0 |
| TTIVSRPLAIVAATEPAHVQTTVVCGRRHSVHIRTRSGGHDYEGLSYASIDVDPHRRHFAVLDLAALRAIHVDASRAEAWVESGATLGELYYAAAAANST FGFPAGNCPTVGVGGQLSGGGFGSLSRKYGLSADNVVDAVVVDAEGRLLNRSTMGKDLFWAIRGGGGESFGVVVSWKVRLVPVTETVTVFSIRRLRNESA VDLITKWQAIAPALPRDLYLRVLVQNQQANFVALFLGRCGSLVDTMRGHFPDLGMAERDCQEMSWVKSAVFFFYGTADLPAEVLLNRSSNPYYYLKVKSD HVQEAMPRHAWESIWSNWLEKPEAALLMLDPYGGRMGSISPSATPFPHRNYLYQLQFYSVWYENGTAELEKRMSWVRGVYEDLTPYVSKNPRAVYVNYRD LDLGTNELEEGSNVTSYAKARVWGEKYFNGNFKRLAAVKSKVDPHDFFRNEQSI | |||
| Full Sequence |
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| Protein Sequence Length: 514 Download |
| MWMHSSAASP RTFRLPSCIY TPANNNFSSV LVSSVRNLRY YDYDVTPGPD TTTIVSRPLA 60 IVAATEPAHV QTTVVCGRRH SVHIRTRSGG HDYEGLSYAS IDVDPHRRHF AVLDLAALRA 120 IHVDASRAEA WVESGATLGE LYYAAAAANS TFGFPAGNCP TVGVGGQLSG GGFGSLSRKY 180 GLSADNVVDA VVVDAEGRLL NRSTMGKDLF WAIRGGGGES FGVVVSWKVR LVPVTETVTV 240 FSIRRLRNES AVDLITKWQA IAPALPRDLY LRVLVQNQQA NFVALFLGRC GSLVDTMRGH 300 FPDLGMAERD CQEMSWVKSA VFFFYGTADL PAEVLLNRSS NPYYYLKVKS DHVQEAMPRH 360 AWESIWSNWL EKPEAALLML DPYGGRMGSI SPSATPFPHR NYLYQLQFYS VWYENGTAEL 420 EKRMSWVRGV YEDLTPYVSK NPRAVYVNYR DLDLGTNELE EGSNVTSYAK ARVWGEKYFN 480 GNFKRLAAVK SKVDPHDFFR NEQSIPPLPA AAK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 2.0e-9 | 50 | 270 | 228 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam08031 | BBE | 4.0e-16 | 445 | 506 | 62 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| pfam01565 | FAD_binding_4 | 2.0e-16 | 58 | 203 | 147 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD54128.1 | 0 | 16 | 511 | 49 | 529 | putative CPRD2 [Oryza sativa Japonica Group] |
| RefSeq | NP_001057826.1 | 0 | 16 | 511 | 1260 | 1740 | Os06g0548100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001143977.1 | 0 | 16 | 511 | 45 | 525 | hypothetical protein LOC100276794 [Zea mays] |
| RefSeq | XP_002438539.1 | 0 | 16 | 508 | 31 | 511 | hypothetical protein SORBIDRAFT_10g021670 [Sorghum bicolor] |
| RefSeq | XP_002443690.1 | 0 | 1 | 513 | 1 | 513 | hypothetical protein SORBIDRAFT_07g000490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 16 | 508 | 23 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 16 | 508 | 23 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 16 | 508 | 21 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 16 | 508 | 21 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 16 | 508 | 21 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HX127313 | 263 | 251 | 511 | 0 |
| HO777438 | 471 | 56 | 508 | 0 |
| DR973344 | 257 | 228 | 483 | 0 |
| FL800486 | 246 | 80 | 325 | 0 |
| FF362497 | 229 | 284 | 511 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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