| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g000740.1 |
| Family | GH28 |
| Protein Properties | Length: 498 Molecular Weight: 53658.7 Isoelectric Point: 6.5074 |
| Chromosome | Chromosome/Scaffold: 7 Start: 585287 End: 589107 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 127 | 471 | 0 |
| AGGARLEVPPGRWLTGSFNLTSRFTLFLHRGAVILGSQDPEEWPLIAPLPSYGRGRERLGPRHISLIHGEGLNDVVITGSNGTIDGQGNMWWELWWNRTL NHTRGHLIELVNSTNILISSITLRNSPFWTVHPVYCSNVVMKDLTILAPLNAPNTDGIDPDSSSEVCIEDCYIESGDDLVAVKSGWDQYGISLGKPSTNI VIQRVSGTTPTCSGVGFGSEMSGGISNVLVRDLHVWNSAQAVRLKTDVGRGGYITNITISNVTMEKVKVPIRFSRGADDHSDDNYDRTALPRISNVLISD VVGVDLQRAPMLEAVPGAVYEEICFRNFSLRGIRRQDRWHCESVY | |||
| Full Sequence |
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| Protein Sequence Length: 498 Download |
| MAAAHATKAA HAADDHDVSP LPLPWPRPAP LLVILSLLAG ASYLALTRVP AFASSGRLVP 60 AALLPIAPPR PHDSRSRDSC AGFYAGAGPS RAVTASVEEF GAVGDGATPN TAAFRRAVAE 120 LEARAGAGGA RLEVPPGRWL TGSFNLTSRF TLFLHRGAVI LGSQDPEEWP LIAPLPSYGR 180 GRERLGPRHI SLIHGEGLND VVITGSNGTI DGQGNMWWEL WWNRTLNHTR GHLIELVNST 240 NILISSITLR NSPFWTVHPV YCSNVVMKDL TILAPLNAPN TDGIDPDSSS EVCIEDCYIE 300 SGDDLVAVKS GWDQYGISLG KPSTNIVIQR VSGTTPTCSG VGFGSEMSGG ISNVLVRDLH 360 VWNSAQAVRL KTDVGRGGYI TNITISNVTM EKVKVPIRFS RGADDHSDDN YDRTALPRIS 420 NVLISDVVGV DLQRAPMLEA VPGAVYEEIC FRNFSLRGIR RQDRWHCESV YGEAHEVFPA 480 PCEEFRKNGS SSWCGFI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 1.0e-17 | 198 | 397 | 213 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 9.0e-20 | 187 | 433 | 257 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-23 | 196 | 429 | 245 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-29 | 193 | 430 | 246 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-54 | 95 | 407 | 338 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ05322.1 | 0 | 75 | 495 | 59 | 480 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
| GenBank | EAZ41253.1 | 0 | 70 | 495 | 54 | 480 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
| RefSeq | NP_001060796.1 | 0 | 75 | 495 | 59 | 480 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148255.1 | 0 | 33 | 497 | 32 | 493 | polygalacturonase [Zea mays] |
| RefSeq | XP_002443718.1 | 0 | 1 | 497 | 1 | 497 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.00053e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.00053e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.00053e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.00053e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-16 | 139 | 397 | 52 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL761876 | 254 | 137 | 390 | 0 |
| FF588441 | 236 | 141 | 376 | 0 |
| HX186729 | 243 | 242 | 484 | 0 |
| CJ809401 | 245 | 253 | 496 | 0 |
| HO798662 | 300 | 189 | 488 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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