| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g005400.1 |
| Family | CBM53 |
| Protein Properties | Length: 1665 Molecular Weight: 187848 Isoelectric Point: 4.7947 |
| Chromosome | Chromosome/Scaffold: 7 Start: 7507724 End: 7517580 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 782 | 865 | 4.1e-32 |
| STIDLYFNRDLSAVANEPDVLIKGAFNGWKWKFFTEKLHKSELGGGWWCCKLYIPKQAYRMDFVFFNGRTLYENNDNNDFVIQI | |||
| CBM53 | 957 | 1045 | 4.8e-33 |
| ATIRLYYNINSRPLVHSTEIWMHGGYNNWIDGLSFSERLVHHNDKDSDWCFADVVLPERTYVLDWVFADGPPGNARNYDNNGGHDFHAT | |||
| CBM53 | 1118 | 1206 | 2e-34 |
| GTTVDVLYNPSNTVLTGKPEVWFRCSFNRWMYPGGVLPPQKMVQAENGSHLKATVYVPRDAYMMDFVFSESEEGGIYDNRNGLDYHIPV | |||
| GT5 | 1217 | 1659 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKHDCLNLSNVKNLHIHQSFSWGGSEIKVWRGLVEGLCVYFLEPQNGMFGVGCVYGRNDD RRFGFFCHSALEFLLQSRSSPNIIHCHDWSSAPVAWLYKENYAESSLANARVVFTIHNLEFGAHYIGKAMKYCDKATTVSNTYSREVSGHSAIVPHLGKF YGILNGIDPDIWDPYNDNFIPVHYTSENVIEGKRAAKKALQQKFGLQQIDVPIVGIVTRLTAQKGIHLIKHAIHRTLERNGQVVLLGSAPDPRIQADFVN LANTLHGVNHGQVRMSLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGTIPIVRKTGGLFDTVFDVDNDKERARARGLDPNGFSFDGADSKGVD YALNRAISAWFDARSWFHSLCKRVMEQDWSWNRPALDYIELYR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1665 Download |
| MEMALRSQSP LCLRSGPVFV VRPTAAGGGA TQPLLRPTRF VRRRIIQRVV ASPGCPNRKS 60 RTNFPNVKVA AFSNYAPRLL VESSSKKSEH HDSRHHEETI DTFNGLSGSD VAESSNRDVE 120 IEVDLQHNSE EELPGNVLIN MSSGEMETMD DAEVEEDKFE LKFSGVLLRN AAVSELNPKD 180 EHKAKEDVFV VDSSGTALDN AAVEEVVDEA EVEEDMVDVD ILGLALNDVT MEEMDLMDRE 240 EALQENFDVN SPGNASSGGM YSGVDELGKP PSTSMDGIAD NETRRNLKPV PLPIVRYQEQ 300 EKIVLSIVEE EGLIVGSCEE GQAVVDYHKQ EENSTNFDEQ KQLTDGFPDQ GIYIVQFPKQ 360 NNDTVGSPKF LEQKQEFVGS YKQDRSIIGL HEHDQSIVGV PQQIQYIDQS IAGSHKQDES 420 IASAPEKIQS VGGYIKPNQS IVGSCRQHES IIVVPEKIQS IISYNEIDQS IVGSHKQDKS 480 VVSVPEQTQS IVSYSTTNQS TIDSYRQVES IIGVPEKVQS IISYDKLDKS IVGSHKQDES 540 IVSVPEKIQS IVGYSKPDQS IVGLPKQQHS IVHIDERKQS IVGFPKQDLS IIGISKESQT 600 MQLATVGTHD GLLMKGVEAK ETSQKTEADT LQAEFYADNL LQKHKEGFTK ETDEITIIEK 660 INDEDLMMIE EEKSIGMEEQ MVITEEDIPM AKVEIGIDKA KFLHLLSEEE SSWDENEVGI 720 IEDEEQYEVD ETSMSTEQDI QESPNDNVDP QALQRMLQEL AEKNSSLGNK LFAYPEVLKA 780 DSTIDLYFNR DLSAVANEPD VLIKGAFNGW KWKFFTEKLH KSELGGGWWC CKLYIPKQAY 840 RMDFVFFNGR TLYENNDNND FVIQIESTMD ENLFEDFLAE EKQRELEKLA NEEAERRRQT 900 EEQRRREEER AADKADRAQA KVEVEMKKKK LHNVLGLARA SVDNLWYIEP IATGQGATIR 960 LYYNINSRPL VHSTEIWMHG GYNNWIDGLS FSERLVHHND KDSDWCFADV VLPERTYVLD 1020 WVFADGPPGN ARNYDNNGGH DFHATLPNNM TVEEYWMEEE QRIYTRLQQE RREREEAIKR 1080 KAERNAKMKA EMKEKTMRMF LVSQKHIVYT EPLEIRAGTT VDVLYNPSNT VLTGKPEVWF 1140 RCSFNRWMYP GGVLPPQKMV QAENGSHLKA TVYVPRDAYM MDFVFSESEE GGIYDNRNGL 1200 DYHIPVFGSI AKEPPMHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQDLGH NVEVILPKHD 1260 CLNLSNVKNL HIHQSFSWGG SEIKVWRGLV EGLCVYFLEP QNGMFGVGCV YGRNDDRRFG 1320 FFCHSALEFL LQSRSSPNII HCHDWSSAPV AWLYKENYAE SSLANARVVF TIHNLEFGAH 1380 YIGKAMKYCD KATTVSNTYS REVSGHSAIV PHLGKFYGIL NGIDPDIWDP YNDNFIPVHY 1440 TSENVIEGKR AAKKALQQKF GLQQIDVPIV GIVTRLTAQK GIHLIKHAIH RTLERNGQVV 1500 LLGSAPDPRI QADFVNLANT LHGVNHGQVR MSLTYDEPLS HLIYAGSDFI LVPSIFEPCG 1560 LTQLVAMRYG TIPIVRKTGG LFDTVFDVDN DKERARARGL DPNGFSFDGA DSKGVDYALN 1620 RAISAWFDAR SWFHSLCKRV MEQDWSWNRP ALDYIELYRS ASKL* 1680 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 7.0e-6 | 62 | 162 | 117 | + synthase/transferase | ||
| TIGR02095 | glgA | 2.0e-151 | 1216 | 1661 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 6.0e-160 | 1216 | 1661 | 484 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-172 | 1217 | 1660 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 670 | 1663 | 1003 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF88000.1 | 1.00053e-42 | 1 | 500 | 1 | 544 | starch synthase III [Aegilops tauschii] |
| GenBank | AAF88000.1 | 0 | 522 | 1664 | 453 | 1611 | starch synthase III [Aegilops tauschii] |
| GenBank | ACC86846.1 | 0 | 1 | 1664 | 1 | 1684 | starch synthase IIIa precursor [Sorghum bicolor] |
| RefSeq | NP_001104881.1 | 0 | 1 | 1664 | 1 | 1674 | starch synthase DULL1 [Zea mays] |
| RefSeq | XP_002443985.1 | 0 | 1 | 1664 | 1 | 1664 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 1216 | 1658 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3cx4_A | 0 | 1216 | 1658 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3cop_A | 0 | 1216 | 1658 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso |
| PDB | 3guh_A | 0 | 1216 | 1658 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso |
| PDB | 2r4u_A | 0 | 1216 | 1658 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 566 | 1100 | 1664 | 0 |
| HO778003 | 737 | 729 | 1460 | 0 |
| CD437215 | 301 | 1364 | 1664 | 0 |
| HO651392 | 412 | 1253 | 1663 | 0 |
| HO794758 | 99 | 947 | 1043 | 3.7 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
