| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g006050.1 |
| Family | CE8 |
| Protein Properties | Length: 400 Molecular Weight: 43743.1 Isoelectric Point: 5.1165 |
| Chromosome | Chromosome/Scaffold: 7 Start: 8588450 End: 8590291 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 93 | 385 | 0 |
| CVDPNGCCEFTTVQAAVDAVPNHSSKRNVVWINKGIYFEKVTVPASKPNITFQGQGFDLTAIAWNDTAKSANGTFYSASVSVFASGFIAKNISFINVAPI PRPGAVDAQAVAIRINGDQAAFWGCGFFGAQDTLHDDRGRHYFKECFIQGSIDFIFGDARSLYENCRLISIADPVPSGQRSITGSVTAHARVSEDDNTGY SFVNCSIGGTGWIWLGRAWRPYSRVIFAYTSMSDIIASEGWNDWNDHTRDQTVFYGEYKCTGDGANLADRVPYAQKLSDVQVLPYLNTSFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 400 Download |
| MQMSAKINGA AAAAAFLLFY THLYFPTTVH LYSSATPLLG ALVNLTTPSL PLYPFSVDST 60 STHHQYDCKY NPLCDDFPPD FPPPDIPAVS IFCVDPNGCC EFTTVQAAVD AVPNHSSKRN 120 VVWINKGIYF EKVTVPASKP NITFQGQGFD LTAIAWNDTA KSANGTFYSA SVSVFASGFI 180 AKNISFINVA PIPRPGAVDA QAVAIRINGD QAAFWGCGFF GAQDTLHDDR GRHYFKECFI 240 QGSIDFIFGD ARSLYENCRL ISIADPVPSG QRSITGSVTA HARVSEDDNT GYSFVNCSIG 300 GTGWIWLGRA WRPYSRVIFA YTSMSDIIAS EGWNDWNDHT RDQTVFYGEY KCTGDGANLA 360 DRVPYAQKLS DVQVLPYLNT SFIDGDQWLK PYCDSLISA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02671 | PLN02671 | 1.0e-98 | 91 | 390 | 308 | + pectinesterase | ||
| PLN02634 | PLN02634 | 8.0e-107 | 94 | 391 | 306 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 2.0e-114 | 88 | 391 | 305 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 1.0e-127 | 86 | 391 | 313 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 0 | 26 | 394 | 379 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN08648.1 | 0 | 73 | 390 | 71 | 388 | Pectinesterase [Medicago truncatula] |
| GenBank | EEC83093.1 | 0 | 14 | 399 | 14 | 394 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
| GenBank | EEE68230.1 | 0 | 36 | 399 | 154 | 519 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
| RefSeq | XP_002445213.1 | 0 | 1 | 399 | 1 | 399 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
| RefSeq | XP_002521065.1 | 0 | 73 | 392 | 75 | 394 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 93 | 390 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-40 | 93 | 396 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 6e-17 | 90 | 262 | 33 | 219 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 9e-17 | 102 | 383 | 18 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 9e-17 | 102 | 383 | 18 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
