| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g006340.1 |
| Family | CBM43 |
| Protein Properties | Length: 495 Molecular Weight: 52082.9 Isoelectric Point: 5.4231 |
| Chromosome | Chromosome/Scaffold: 7 Start: 9181000 End: 9184678 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 374 | 455 | 1.9e-24 |
| WCVLKPAADLADQKVGDSVSYACGLADCTSLGYKTSCAGLDAKGNVSYAYNIYYQTMDQDDRACGFNGLATTTSVDPSAGTC | |||
| GH17 | 34 | 352 | 0 |
| IGVNWGTQLSHQLPASTVVRLLQDNGFDKVKLFDAEDTILGALKGSGIQVMVGIPNDLLADLAAGGKAADNWVAKNVSGHVRDGVDIRYVAVGNEPFLET FNGTYLKTTFPAMQNVQAALVKAGLADKVKVTVPLNADVYQSPTGKPSDGDFRADIHGLMLTIVQFLASTGSPFVANVYPFISLYADPNFPLDYAFFQGS SSPVVDGGGVTYQNTFDANHDTLVAALRRNGFGNVSVVVGEVGWPTDGDANANLDYARRFNQGFLTHIASGQGTPLRPGPVDAYLFSLIDEDRKSIQPGN FERHWGIFYYDGTPKYPLS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 495 Download |
| MARGGRSVSQ PVAAELLLVL AVALCAAARR TSAIGVNWGT QLSHQLPAST VVRLLQDNGF 60 DKVKLFDAED TILGALKGSG IQVMVGIPND LLADLAAGGK AADNWVAKNV SGHVRDGVDI 120 RYVAVGNEPF LETFNGTYLK TTFPAMQNVQ AALVKAGLAD KVKVTVPLNA DVYQSPTGKP 180 SDGDFRADIH GLMLTIVQFL ASTGSPFVAN VYPFISLYAD PNFPLDYAFF QGSSSPVVDG 240 GGVTYQNTFD ANHDTLVAAL RRNGFGNVSV VVGEVGWPTD GDANANLDYA RRFNQGFLTH 300 IASGQGTPLR PGPVDAYLFS LIDEDRKSIQ PGNFERHWGI FYYDGTPKYP LSLAGGNGST 360 LKPARGVKYL EKKWCVLKPA ADLADQKVGD SVSYACGLAD CTSLGYKTSC AGLDAKGNVS 420 YAYNIYYQTM DQDDRACGFN GLATTTSVDP SAGTCRFIVE IDVGAAAAPS SAMAGVAVGW 480 AAAVLAAFVL SVVL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-6 | 266 | 344 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 8.0e-15 | 373 | 444 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-28 | 373 | 457 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-75 | 34 | 352 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY84415.1 | 0 | 32 | 466 | 33 | 464 | hypothetical protein OsI_05789 [Oryza sativa Indica Group] |
| GenBank | EAZ06041.1 | 0 | 28 | 461 | 23 | 460 | hypothetical protein OsI_28283 [Oryza sativa Indica Group] |
| RefSeq | NP_001061277.1 | 0 | 28 | 461 | 23 | 460 | Os08g0224500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151032.1 | 0 | 37 | 466 | 36 | 465 | glucan endo-1,3-beta-glucosidase 6 [Zea mays] |
| RefSeq | XP_002445228.1 | 0 | 1 | 469 | 1 | 469 | hypothetical protein SORBIDRAFT_07g006340 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 34 | 353 | 1 | 306 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1aq0_B | 0 | 34 | 353 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 34 | 353 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_D | 0 | 34 | 354 | 2 | 316 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3f55_C | 0 | 34 | 354 | 2 | 316 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
