| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g016320.1 |
| Family | GT9 |
| Protein Properties | Length: 466 Molecular Weight: 51377.5 Isoelectric Point: 6.1304 |
| Chromosome | Chromosome/Scaffold: 7 Start: 40438572 End: 40441435 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT9 | 188 | 437 | 2.5e-21 |
| VLKNRYYDLIVSTRLAGLGHALFLFMSSARDKVGYVYPNVNSVGAGLFLDEMFKPPTNNLSDGGYHMYKDMLEWIGRPAKDVPQQPTPPLRVSISKKLRA YVEDKYSRAGVEKGKYVVIHGIASDSVANMKSRGDDDCLLPLEHWAQIAKEISSGDKGLKPLFVIPHEKHRDEIEEEVGEDANILFITTPGQLTCLINDS AGVVATNTSAVQLANARDKACVALFSSAEKAKLFLPYVEDKSSCTVISSA | |||
| Full Sequence |
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| Protein Sequence Length: 466 Download |
| MSTSMATTPT TARAMAPARP PAPRQCCRYL VLPSTGHRRS IAAWSAKKKN PWLDPFDDGP 60 DEEFDYQGMF SGGKQEEDPR PPEDPANPYG FLRFPQGYNP ELDSLASKVR GDVRRACCVV 120 SGGVYENVLF FPVVQMLKDR YPGVLVDVVA SARGKQVYEM CKNVRYANVY DPDDDWPEPT 180 EYTHMLGVLK NRYYDLIVST RLAGLGHALF LFMSSARDKV GYVYPNVNSV GAGLFLDEMF 240 KPPTNNLSDG GYHMYKDMLE WIGRPAKDVP QQPTPPLRVS ISKKLRAYVE DKYSRAGVEK 300 GKYVVIHGIA SDSVANMKSR GDDDCLLPLE HWAQIAKEIS SGDKGLKPLF VIPHEKHRDE 360 IEEEVGEDAN ILFITTPGQL TCLINDSAGV VATNTSAVQL ANARDKACVA LFSSAEKAKL 420 FLPYVEDKSS CTVISSATGK LIDIDINAVK NTVKDFEPAP SFALA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03789 | GT1_LPS_heptosyltransferase | 0.004 | 328 | 424 | 101 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| TIGR02193 | heptsyl_trn_I | 0.0003 | 270 | 430 | 163 | + lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| cd03789 | GT1_LPS_heptosyltransferase | 9.0e-5 | 128 | 222 | 95 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| COG0859 | RfaF | 7.0e-27 | 113 | 424 | 315 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18065.1 | 0 | 36 | 462 | 49 | 470 | unknown [Glycine max] |
| GenBank | EEC83246.1 | 0 | 1 | 465 | 1 | 460 | hypothetical protein OsI_28562 [Oryza sativa Indica Group] |
| GenBank | EEE68378.1 | 0 | 1 | 465 | 1 | 424 | hypothetical protein OsJ_26704 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061432.1 | 0 | 1 | 465 | 6 | 467 | Os08g0276100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142788.1 | 0 | 24 | 465 | 23 | 464 | hypothetical protein LOC100275158 [Zea mays] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EC878039 | 272 | 83 | 354 | 0 |
| EE170514 | 272 | 83 | 354 | 0 |
| EE046780 | 269 | 83 | 351 | 0 |
| EE026840 | 268 | 82 | 349 | 0 |
| GO879343 | 302 | 156 | 457 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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