| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g016970.1 |
| Family | GH28 |
| Protein Properties | Length: 392 Molecular Weight: 42002.1 Isoelectric Point: 8.7669 |
| Chromosome | Chromosome/Scaffold: 7 Start: 42079162 End: 42081307 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 380 | 0 |
| KAACGSAGAVTMVVTPGTYYIGPVQFHGPCKASSLTFQLQGSTLKAATDLSKFGNDWIEFGWVNGLTVTGGTIDGQGAASWPFNKCPVRKDCKVLPTSVL FVNNQNTVVRDVTSVNPKFFHMALLTVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQITDTRISTGDDCISIGQGNDNVQIARVQCGPGHGMSVGSLGR YASEGDVTRVHVRDMTFTGTTNGVRIKTWENSPSKSHAAHMVFENMVMKDVQNPIIIDQKYCPYYNCEHKYVSGVTIQDIQFKNIKGTAATQVAVLLRCG VPCQGLVLQDVDLRYKGQGGTLAKCENAKAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MELRPWLLLV VVAIVVSISA DGGTVINVKN YGAHGNGAND DSKPLMAAWK AACGSAGAVT 60 MVVTPGTYYI GPVQFHGPCK ASSLTFQLQG STLKAATDLS KFGNDWIEFG WVNGLTVTGG 120 TIDGQGAASW PFNKCPVRKD CKVLPTSVLF VNNQNTVVRD VTSVNPKFFH MALLTVKNIR 180 MSGLKISAPS NSPNTDGIHI ERSSGIQITD TRISTGDDCI SIGQGNDNVQ IARVQCGPGH 240 GMSVGSLGRY ASEGDVTRVH VRDMTFTGTT NGVRIKTWEN SPSKSHAAHM VFENMVMKDV 300 QNPIIIDQKY CPYYNCEHKY VSGVTIQDIQ FKNIKGTAAT QVAVLLRCGV PCQGLVLQDV 360 DLRYKGQGGT LAKCENAKAK YVGNQFPKPC P* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-77 | 25 | 390 | 376 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-79 | 24 | 388 | 375 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 3.0e-81 | 25 | 390 | 371 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-92 | 59 | 378 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 22 | 391 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE68484.1 | 0 | 22 | 391 | 35 | 389 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061556.1 | 0 | 22 | 391 | 35 | 407 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002279959.1 | 0 | 25 | 390 | 52 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002437842.1 | 0 | 26 | 390 | 31 | 394 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
| RefSeq | XP_002444237.1 | 0 | 1 | 391 | 1 | 391 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-18 | 120 | 346 | 117 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000003 | 107 | 376 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000003 | 107 | 376 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000003 | 107 | 376 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000003 | 107 | 376 | 63 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
