| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g024560.1 |
| Family | PL4 |
| Protein Properties | Length: 664 Molecular Weight: 75541 Isoelectric Point: 4.8481 |
| Chromosome | Chromosome/Scaffold: 7 Start: 59625185 End: 59629259 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 29 | 646 | 0 |
| ATAGVTVKVTDRYVEIKNGIFELTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWNPPGQKTGIFDVIKGTEFRIIYQDENQAEVSFTRNWDPSL EGKAVPLNIDKRFIVLRGSSGFYTYGIYEHKEGWPDFGLGETRVAFKLRKDKFHYMALADDRQRIMPMPDDRLPPRGQPLAYPEAVLLVDPINPDLRGEV DDKYQYSCEDQYNNVHGWMSFDPPIGFWQITPSDEFRTGGPLKQNLTSHVGPTMLAMFLSAHYAGDDLSPKFTNGEYWKKVHGPVFMYLNSSWDGSDPTM LWEDAKVQMMIEKENWPYCFALSEDFQKTEQRGCVSGRLLVRDRYIDDQDLYASGAYVGLALPGEAGSWQRECKGYQFWCRADVDGSFYIRNIVTGKYNL YAWVPGFIGDYRLDATLTISSGDDIYLGDLVYEPPRDGPTMWEIGVPDRSAAEFYVPDPNPNYVNRLYINHPADRFRQYGLWERYAELYPNSDLVYTVGQ SDYTTDWFYAQVNRKLDDNTYQPTTWQIKFNLDSVSPSSTYKFRVALASSALAELQVFFNDQDKARPHFATGLIGRENAIARHGIHGLYWLFNIDVASAW LVQGVNTIYLKQPRSQSP | |||
| Full Sequence |
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| Protein Sequence Length: 664 Download |
| MGKLSCRSLC ACCMGPPRAA SPAGAAVDAT AGVTVKVTDR YVEIKNGIFE LTLSNPDGIV 60 TGVRYNGVDN LMEILNKEDN RGYWDLVWNP PGQKTGIFDV IKGTEFRIIY QDENQAEVSF 120 TRNWDPSLEG KAVPLNIDKR FIVLRGSSGF YTYGIYEHKE GWPDFGLGET RVAFKLRKDK 180 FHYMALADDR QRIMPMPDDR LPPRGQPLAY PEAVLLVDPI NPDLRGEVDD KYQYSCEDQY 240 NNVHGWMSFD PPIGFWQITP SDEFRTGGPL KQNLTSHVGP TMLAMFLSAH YAGDDLSPKF 300 TNGEYWKKVH GPVFMYLNSS WDGSDPTMLW EDAKVQMMIE KENWPYCFAL SEDFQKTEQR 360 GCVSGRLLVR DRYIDDQDLY ASGAYVGLAL PGEAGSWQRE CKGYQFWCRA DVDGSFYIRN 420 IVTGKYNLYA WVPGFIGDYR LDATLTISSG DDIYLGDLVY EPPRDGPTMW EIGVPDRSAA 480 EFYVPDPNPN YVNRLYINHP ADRFRQYGLW ERYAELYPNS DLVYTVGQSD YTTDWFYAQV 540 NRKLDDNTYQ PTTWQIKFNL DSVSPSSTYK FRVALASSAL AELQVFFNDQ DKARPHFATG 600 LIGRENAIAR HGIHGLYWLF NIDVASAWLV QGVNTIYLKQ PRSQSPFQGL MYDYLRLEGP 660 CGC* 720 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 2.0e-31 | 359 | 458 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 3.0e-53 | 470 | 658 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-72 | 39 | 320 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-102 | 39 | 228 | 190 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD10227.1 | 0 | 14 | 663 | 1 | 645 | putative MYST1 [Oryza sativa Japonica Group] |
| GenBank | EEE69123.1 | 0 | 4 | 658 | 650 | 1299 | hypothetical protein OsJ_28233 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062464.1 | 0 | 1 | 662 | 1 | 657 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001062465.1 | 0 | 16 | 663 | 4 | 606 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002445711.1 | 0 | 1 | 663 | 1 | 663 | hypothetical protein SORBIDRAFT_07g024560 [Sorghum bicolor] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO843311 | 315 | 5 | 319 | 0 |
| GO850432 | 306 | 5 | 310 | 0 |
| FE632882 | 246 | 120 | 365 | 0 |
| GO843500 | 256 | 409 | 664 | 0 |
| GO850432 | 25 | 311 | 335 | 1.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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