| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g024870.1 |
| Family | GH35 |
| Protein Properties | Length: 845 Molecular Weight: 95029.2 Isoelectric Point: 9.1852 |
| Chromosome | Chromosome/Scaffold: 7 Start: 59848159 End: 59852452 |
| Description | glycosyl hydrolase family 35 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 45 | 348 | 0 |
| LMVDGRREIFFSGSIHYPRSPPDMWPELIAKAKEGGLNTIETYVFWNIHEPEKGQFNFEGRYDMVKFFKLIQEHDMFAMVRLGPFIQAEWNHGGLPYWLR EIPDIVFRTNNEPYKMHMETFVKIVIKRLKDANLFASQGGPIILAQIENEYQHLEAAFKEEGTKYIHWAAQMAIGTNIGIPWIMCKQTKAPGDVIPTCNG RNCGDTWPGPMNKTMPLLWTENWTAQYRVFGDPPSQRSAEDIAFAVARFFSVGGTMTNYYMYHGGTNFGRTAAAFVMPKYYDEAPLDEFGLYKEPKWGHL RDLH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 845 Download |
| MSHRVRLAAA LVVVAALAAA LAPGAAAAWQ LTKNGTVISY DRRSLMVDGR REIFFSGSIH 60 YPRSPPDMWP ELIAKAKEGG LNTIETYVFW NIHEPEKGQF NFEGRYDMVK FFKLIQEHDM 120 FAMVRLGPFI QAEWNHGGLP YWLREIPDIV FRTNNEPYKM HMETFVKIVI KRLKDANLFA 180 SQGGPIILAQ IENEYQHLEA AFKEEGTKYI HWAAQMAIGT NIGIPWIMCK QTKAPGDVIP 240 TCNGRNCGDT WPGPMNKTMP LLWTENWTAQ YRVFGDPPSQ RSAEDIAFAV ARFFSVGGTM 300 TNYYMYHGGT NFGRTAAAFV MPKYYDEAPL DEFGLYKEPK WGHLRDLHLA LKLCKKALLW 360 GKPSTEKLGK QLEARVFEIP EQKVCVAFLS NHNTKDDVTL TFRGQPYFVP RHSISILADC 420 KTVVFGTQHV NAQHNQRTFH FADQTNQNNV WQMFDEEKVP KYKQAKIRTR KAADLYNLTK 480 DKTDYVWYTS SFKLEPDDMP IRRDIKTVVE VNSHGHASVA FVNNKFAGCG HGTKMNKAFT 540 LEKPMELKKG VNHVAVLASS MGMMDSGAYL EHRLAGVDRV QITGLNAGTL DLTNNGWGHI 600 VGLVGEQKEI YTEKGMASVT WKPAVNDKPL TWYKRHFDMP SGEDPIVLDM STMGKGMMYV 660 NGQGIGRYWM SYKHALGRPS QQLYHIPRSF LRPKDNVLVL FEEEFGRPDA IMILTVKRDN 720 ICTYISERNP AHIKSWERKD SQITATADDL KARATLTCPP KKLIQQVVFA SYGNPVGICG 780 NYTIGSCHTP RAKEVVEKSC LGKRTCTLPV SADVYGGDVN CPGTTATLAV QAKCSKRAPS 840 ASAQ* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 0.0002 | 65 | 195 | 149 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| COG1874 | LacA | 8.0e-19 | 38 | 195 | 169 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam02140 | Gal_Lectin | 6.0e-22 | 756 | 834 | 83 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 3.0e-135 | 44 | 346 | 317 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 38 | 835 | 825 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL54349.1 | 0 | 29 | 842 | 34 | 849 | unknown [Zea mays] |
| GenBank | EEE69115.1 | 0 | 30 | 843 | 25 | 845 | hypothetical protein OsJ_28192 [Oryza sativa Japonica Group] |
| GenBank | EEE70132.1 | 0 | 29 | 842 | 27 | 838 | hypothetical protein OsJ_30164 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062440.1 | 0 | 30 | 843 | 25 | 845 | Os08g0549200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002445734.1 | 0 | 1 | 844 | 1 | 844 | hypothetical protein SORBIDRAFT_07g024870 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 3e-39 | 42 | 347 | 12 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 5e-37 | 38 | 347 | 11 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 5e-37 | 38 | 347 | 11 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_B | 5e-37 | 38 | 347 | 11 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
