| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g025130.1 |
| Family | GH28 |
| Protein Properties | Length: 422 Molecular Weight: 43562.1 Isoelectric Point: 6.2786 |
| Chromosome | Chromosome/Scaffold: 7 Start: 60162714 End: 60164536 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 383 | 0 |
| RAACDSTAGNATLHFPKGTFAVGAVEFEGPCRNGGAPAVVIDGVLQPCAGCRLSSDAWITFSGLNNLLVTGDGGTLDGQGAGSDDDKVKSKSKTTTTTLV FDGVTNSTLRGLAFVNSRGFHVNIRRSSRVVAEGLGIHAPAHSRNTDGVHVGLSSHIRVLDSVIGTGDDCVSVGPGSVDVVVDGVICGPGHGLSVGSLGK EEGEEDVQGLIIKNCTVKGTTNGVRIKTWPGSPPSRASNITFQDITMDGVANPIIIDQRYCPHDHCADANKISDVTFERIEGTSSSRVAVRLLCSEERPC TGVRLDGINLSCGDQPCRSVLSNVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 422 Download |
| MASIFVKSPV LYFVVVVVVL LCGGHAHGEG KAVTVYDVTE YGAAPSNRDN KDAFLAAWRA 60 ACDSTAGNAT LHFPKGTFAV GAVEFEGPCR NGGAPAVVID GVLQPCAGCR LSSDAWITFS 120 GLNNLLVTGD GGTLDGQGAG SDDDKVKSKS KTTTTTLVFD GVTNSTLRGL AFVNSRGFHV 180 NIRRSSRVVA EGLGIHAPAH SRNTDGVHVG LSSHIRVLDS VIGTGDDCVS VGPGSVDVVV 240 DGVICGPGHG LSVGSLGKEE GEEDVQGLII KNCTVKGTTN GVRIKTWPGS PPSRASNITF 300 QDITMDGVAN PIIIDQRYCP HDHCADANKI SDVTFERIEG TSSSRVAVRL LCSEERPCTG 360 VRLDGINLSC GDQPCRSVLS NVRETPDSGS VVAPVPVPAP APSPVSAPAA RPPVEAFAVA 420 R* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 4.0e-43 | 32 | 369 | 343 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-45 | 35 | 368 | 347 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-46 | 31 | 377 | 359 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-63 | 64 | 382 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-71 | 23 | 383 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD62225.1 | 0 | 13 | 400 | 8 | 414 | putative Exopolygalacturonase precursor [Oryza sativa Japonica Group] |
| EMBL | CBI22963.1 | 0 | 32 | 369 | 28 | 376 | unnamed protein product [Vitis vinifera] |
| GenBank | EAZ01129.1 | 0 | 13 | 400 | 8 | 402 | hypothetical protein OsI_23157 [Oryza sativa Indica Group] |
| GenBank | EEE65794.1 | 0 | 13 | 400 | 8 | 414 | hypothetical protein OsJ_21499 [Oryza sativa Japonica Group] |
| RefSeq | XP_002444632.1 | 0 | 1 | 421 | 1 | 421 | hypothetical protein SORBIDRAFT_07g025130 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 9e-18 | 117 | 376 | 63 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 9e-18 | 117 | 376 | 63 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 9e-18 | 117 | 376 | 63 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 9e-18 | 117 | 376 | 63 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 9e-18 | 117 | 376 | 63 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
