| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb07g026540.1 |
| Family | CBM43 |
| Protein Properties | Length: 485 Molecular Weight: 50523.9 Isoelectric Point: 7.0547 |
| Chromosome | Chromosome/Scaffold: 7 Start: 61676516 End: 61678211 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 393 | 478 | 2.3e-28 |
| WCVLGSKAAANETAVAAAVAYACQQGSGTCAAIQPGGACHEPDMMDAHASYAFNAYWQQFRGAGGTCFFDGLAVTTTKDPSHGSCK | |||
| GH17 | 48 | 370 | 0 |
| LGINYGTVADDLPSASRSVQLLRATGAGAVKIYDANADILRALAGTGMPVSIMVPNSAIPSLASSRAAAEDWVAANLAPHIPATRVAYLLVGNEVLSNRA IAGSTWRSVVPAMANLHRALRAHGIRKVKIGTTLAMDALSASYPPSAGAFRDDIAEDVVRPLLRFLNATGSYYFVDAYPYFAWSGNRNAISLDYALFQGA ASSRYVDPGNGLVYTNLLDQMLDAVVAAMGRLGYGDVKLAVSETGWPSGGDAGEAGANVRNAATYNRNLAARMSKNPGTPARPGAKVPVFLFSLYNEDQK PGAGSERHWGLYYPNGSRVYEVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MAPSSSCHAA AVLLLAVATL ACHFSVLVVA TDVECHCHGA NGNGCRGLGI NYGTVADDLP 60 SASRSVQLLR ATGAGAVKIY DANADILRAL AGTGMPVSIM VPNSAIPSLA SSRAAAEDWV 120 AANLAPHIPA TRVAYLLVGN EVLSNRAIAG STWRSVVPAM ANLHRALRAH GIRKVKIGTT 180 LAMDALSASY PPSAGAFRDD IAEDVVRPLL RFLNATGSYY FVDAYPYFAW SGNRNAISLD 240 YALFQGAASS RYVDPGNGLV YTNLLDQMLD AVVAAMGRLG YGDVKLAVSE TGWPSGGDAG 300 EAGANVRNAA TYNRNLAARM SKNPGTPARP GAKVPVFLFS LYNEDQKPGA GSERHWGLYY 360 PNGSRVYEVD LTGRRSSYPP LPPADDTDSA PAWCVLGSKA AANETAVAAA VAYACQQGSG 420 TCAAIQPGGA CHEPDMMDAH ASYAFNAYWQ QFRGAGGTCF FDGLAVTTTK DPSHGSCKFA 480 SSLD* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 2.0e-6 | 204 | 362 | 164 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-8 | 393 | 466 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-25 | 393 | 479 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-108 | 48 | 370 | 324 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN29077.1 | 0 | 100 | 484 | 1 | 384 | unknown [Zea mays] |
| DDBJ | BAF24208.2 | 0 | 33 | 473 | 20 | 467 | Os08g0525800 [Oryza sativa Japonica Group] |
| GenBank | EAZ07710.1 | 0 | 33 | 473 | 20 | 467 | hypothetical protein OsI_29967 [Oryza sativa Indica Group] |
| RefSeq | NP_001062294.1 | 0 | 33 | 474 | 20 | 468 | Os08g0525800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002444717.1 | 0 | 1 | 484 | 1 | 484 | hypothetical protein SORBIDRAFT_07g026540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 48 | 371 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 48 | 371 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 48 | 371 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 48 | 371 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 48 | 371 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
