| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb08g001440.1 |
| Family | PL4 |
| Protein Properties | Length: 734 Molecular Weight: 79603.1 Isoelectric Point: 6.1755 |
| Chromosome | Chromosome/Scaffold: 8 Start: 1416209 End: 1420078 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 66 | 696 | 0 |
| LRVDDYHHQVVVDNGVVQVTLSKPQGHITGVRYNGERNLLHFDGSENSGGYWDVVWNYRGSDQPRGMIDMLDSTEFKVVVSTEDQVELSFSSTYNPSRQD SVRLNVDKRLVMLKGSSGFYCYAIMEHTSDYPALNISEARLAFKLNTDKFNYMAISDDIQRYMPSAADRDEPRGTPLAYKEAVLLVNPQEPQFKGEVDDK YEYSMDNKDNAVHGWITGGGGPIVGFWVITPSNEFKSGGPMKRELTSHVGPTSLTMFLGTHYVGNDIVLSVGDGEYWKKVMGPVFIYLNSGPSRGGHVRA LWDDAKAMARAEAGKWPYSFPESPDFAKADERGSVAGRLVVQDTFTSTAADVPALTTAYVGLAAPGQAGSWATECKGYQFWTTADASCGGGGGFSFTIGN VRPGVYSVYAWVPGVLGDYVSASSVTVTAGGAVVDLGELVFRPPRSGPTVWEIGVPDRTAAEFFVPDVDPRYANRLFINKDRYRQYGLWARYAELYPDGD PVFTVGQSDASKDWFFAHVTRKVGDGDGDGDGRYAATTREIRFTLDRVVADGTYTLRVALAAAQMSRLQVRVNGRGGGGLAAELTTPEFGGGNAIARHGI HGVEWSFEFPIRGYMLQEGENSVSITQTRAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 734 Download |
| MAAAAGTGTG MMTRSSSVLL LIVVTTVTLH ISVVGASWWS PFSLPHRGGG AASRSSPATA 60 APGVTLRVDD YHHQVVVDNG VVQVTLSKPQ GHITGVRYNG ERNLLHFDGS ENSGGYWDVV 120 WNYRGSDQPR GMIDMLDSTE FKVVVSTEDQ VELSFSSTYN PSRQDSVRLN VDKRLVMLKG 180 SSGFYCYAIM EHTSDYPALN ISEARLAFKL NTDKFNYMAI SDDIQRYMPS AADRDEPRGT 240 PLAYKEAVLL VNPQEPQFKG EVDDKYEYSM DNKDNAVHGW ITGGGGPIVG FWVITPSNEF 300 KSGGPMKREL TSHVGPTSLT MFLGTHYVGN DIVLSVGDGE YWKKVMGPVF IYLNSGPSRG 360 GHVRALWDDA KAMARAEAGK WPYSFPESPD FAKADERGSV AGRLVVQDTF TSTAADVPAL 420 TTAYVGLAAP GQAGSWATEC KGYQFWTTAD ASCGGGGGFS FTIGNVRPGV YSVYAWVPGV 480 LGDYVSASSV TVTAGGAVVD LGELVFRPPR SGPTVWEIGV PDRTAAEFFV PDVDPRYANR 540 LFINKDRYRQ YGLWARYAEL YPDGDPVFTV GQSDASKDWF FAHVTRKVGD GDGDGDGRYA 600 ATTREIRFTL DRVVADGTYT LRVALAAAQM SRLQVRVNGR GGGGLAAELT TPEFGGGNAI 660 ARHGIHGVEW SFEFPIRGYM LQEGENSVSI TQTRAAGEFL GVLYDYLRLE APPGSWRDPT 720 TAARARTRTT RRA* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 3.0e-22 | 396 | 497 | 102 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-46 | 516 | 710 | 197 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 3.0e-54 | 85 | 356 | 275 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-90 | 85 | 262 | 178 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA96404.1 | 0 | 50 | 721 | 34 | 698 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAF29096.2 | 0 | 50 | 712 | 34 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066077.1 | 0 | 50 | 721 | 34 | 685 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001152385.1 | 0 | 1 | 723 | 1 | 719 | lyase [Zea mays] |
| RefSeq | XP_002441731.1 | 0 | 1 | 719 | 1 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |
