| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb08g001860.1 |
| Family | GT47 |
| Protein Properties | Length: 496 Molecular Weight: 54802.1 Isoelectric Point: 9.1083 |
| Chromosome | Chromosome/Scaffold: 8 Start: 1877327 End: 1880826 |
| Description | exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT47 | 110 | 433 | 0 |
| AAVKVFMYDLPPEFHFGLLGWSPPSADSVWPDVTPGSSPPPPRYPGGLNQQHSVEYWLTLDLLSSSSSTPPPCGRHSAVRVADSRDADLVFVPFFASLSY NRHSRPVPPEKVSRDRALQEKLVAYLTARPEWRRFGGADHVIVAHHPNSLLRARETLSPAVFVLSDFGRYPPRVASLEKDVIAPYKHMAKTFINDSAEFD DRPTLLYFRGAIYRKEGGSIRQELYYMLKDEKDVYFSFGSVQDHGASKASQGMHSSKFCLNIAGDTPSSNRLFDAIVSHCVPVIISDNIELPYEDVLDYS KFSIFVRSSDAVKKGYLMQLLSGV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 496 Download |
| MAPRGRTLLL PLAAATLLVA STIFLFAAVG ARWRPADTGL PVPPHHAFPT AVPAAVTSTA 60 SSSPNATAGD KELSFLDENG QPDDPSSVSA SSSTSSTTSA PVRCDPRADA AVKVFMYDLP 120 PEFHFGLLGW SPPSADSVWP DVTPGSSPPP PRYPGGLNQQ HSVEYWLTLD LLSSSSSTPP 180 PCGRHSAVRV ADSRDADLVF VPFFASLSYN RHSRPVPPEK VSRDRALQEK LVAYLTARPE 240 WRRFGGADHV IVAHHPNSLL RARETLSPAV FVLSDFGRYP PRVASLEKDV IAPYKHMAKT 300 FINDSAEFDD RPTLLYFRGA IYRKEGGSIR QELYYMLKDE KDVYFSFGSV QDHGASKASQ 360 GMHSSKFCLN IAGDTPSSNR LFDAIVSHCV PVIISDNIEL PYEDVLDYSK FSIFVRSSDA 420 VKKGYLMQLL SGVSKQQWTK MWNRLKEVDK HFEYQYPSQK DDAVQMIWQA LSRKVPTIKL 480 KVHRSSRFSR SDRGK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 4.0e-55 | 112 | 422 | 321 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA91286.2 | 0 | 1 | 494 | 1 | 474 | secondary cell wall-related glycosyltransferase family 47, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC67582.1 | 0 | 1 | 494 | 1 | 481 | hypothetical protein OsI_34941 [Oryza sativa Indica Group] |
| GenBank | EEE52679.1 | 0 | 53 | 495 | 96 | 528 | hypothetical protein OsJ_35064 [Oryza sativa Japonica Group] |
| RefSeq | NP_001066040.1 | 0 | 1 | 495 | 1 | 475 | Os12g0124400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151894.1 | 0 | 1 | 495 | 1 | 488 | secondary cell wall-related glycosyltransferase family 47 [Zea mays] |
