| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb08g002030.1 |
| Family | PL1 |
| Protein Properties | Length: 310 Molecular Weight: 32907.7 Isoelectric Point: 5.0093 |
| Chromosome | Chromosome/Scaffold: 8 Start: 2054710 End: 2056121 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 86 | 231 | 1e-39 |
| WITFARDMTIRPKQDLVVASDKTVDGRGAGVVVGDGGACFVLRNVSNVIIHGLTIRDCRPAQATSSSSESQGDGITVFSSTDVWVDHCTLEACADGLIDV TDGSTNVTLSNNVLRNHNKTMLLGHSDDLTEYMYIASPTILSHGNR | |||
| Full Sequence |
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| Protein Sequence Length: 310 Download |
| MPSLHRRRMV GECSSGNPVD DCWRCDPSWS DNRQRLADCA VGFGRGSTGG KNGKSYVVTD 60 PSDDADAASP APGTLRYGVI QQEPLWITFA RDMTIRPKQD LVVASDKTVD GRGAGVVVGD 120 GGACFVLRNV SNVIIHGLTI RDCRPAQATS SSSESQGDGI TVFSSTDVWV DHCTLEACAD 180 GLIDVTDGST NVTLSNNVLR NHNKTMLLGH SDDLTEYMYI ASPTILSHGN RFLADKAKEV 240 TKREGAPDSE WSKWTWISED DTMLNGAFFT SSGTPGPEVK APGFAKPSSS VAAITASVGV 300 LPCKEGSLC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.003 | 125 | 199 | 76 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| pfam13229 | Beta_helix | 0.0001 | 124 | 204 | 81 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 1.0e-14 | 46 | 232 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-24 | 126 | 232 | 117 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-33 | 92 | 232 | 152 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF19195.1 | 0 | 6 | 309 | 47 | 407 | AF206319_1 pectate lyase 1 [Musa acuminata AAA Group] |
| EMBL | CAN76500.1 | 0 | 7 | 309 | 43 | 403 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI14899.1 | 0 | 7 | 309 | 43 | 403 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_001055106.1 | 0 | 12 | 309 | 36 | 373 | Os05g0293500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002441767.1 | 0 | 1 | 309 | 1 | 309 | hypothetical protein SORBIDRAFT_08g002030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 17 | 273 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 17 | 273 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.0000000008 | 93 | 212 | 56 | 171 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000001 | 90 | 212 | 114 | 261 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000003 | 96 | 212 | 71 | 205 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL903995 | 202 | 6 | 198 | 0 |
| HO778688 | 365 | 6 | 310 | 0 |
| FG606120 | 321 | 7 | 270 | 0 |
| HO785222 | 143 | 3 | 144 | 0 |
| HO785222 | 205 | 155 | 310 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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