y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb08g004410.1 |
Family | GH35 |
Protein Properties | Length: 924 Molecular Weight: 101994 Isoelectric Point: 4.8341 |
Chromosome | Chromosome/Scaffold: 8 Start: 5275015 End: 5291668 |
Description | beta galactosidase 9 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 76 | 379 | 0 |
LILGGKRRMLVSAGLHYPRATPEMWPSLIAKAKEGGVDVIETYIFWNGHEPAKGQYYFEGRFDIVRFAKLVAAEGLFLFLRIGPYACAEWNFGGFPVWLR DIPGIEFRTDNEPYKAEMQNFVTKIVDIMKEEKLYSWQGGPIILQQIENEYGNIQGKYGQAGKRYMQWAAQMALALDTGVPWVMCRQTDAPEQILDTCNA FYCDGFKPNSYNKPTIWTEDWDGWYADWGEALPHRPAQDSAFAVARFYQRGGSFQNYYMYFGGTNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLK DLHA |
Full Sequence |
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Protein Sequence Length: 924 Download |
MAASPYPTPT GPPPLMGLLG ILLLLLIILV SLSPSIPLAE AGAEAAGVLR QVVGGDDDDG 60 GNFFEPFNVT YDHRALILGG KRRMLVSAGL HYPRATPEMW PSLIAKAKEG GVDVIETYIF 120 WNGHEPAKGQ YYFEGRFDIV RFAKLVAAEG LFLFLRIGPY ACAEWNFGGF PVWLRDIPGI 180 EFRTDNEPYK AEMQNFVTKI VDIMKEEKLY SWQGGPIILQ QIENEYGNIQ GKYGQAGKRY 240 MQWAAQMALA LDTGVPWVMC RQTDAPEQIL DTCNAFYCDG FKPNSYNKPT IWTEDWDGWY 300 ADWGEALPHR PAQDSAFAVA RFYQRGGSFQ NYYMYFGGTN FERTAGGPLQ ITSYDYDAPI 360 DEYGILRQPK WGHLKDLHAA IKLCEPALTA VDGSPRYIKL GPMQEAHVYS SENVHTNGSI 420 SGNAQFCSAF LANIDEHKYA SVWIFGKSYS LPPWSVSILP DCETVAFNTA RVGTQTSFFN 480 VESGSPSYSS RHKPRILSLG GPYLSSTWWA SKEPVGIWSE DIFAAQGILE HLNVTKDISD 540 YLSYTTRVNI SDEDVLYWNS EGLLPSLTID QIRDVVRIFV NGKLAGSQVG HWVSLNQPLQ 600 LVQGLNELTL LSEIVGLQNY GAFLEKDGAG FRGQVKLTGL SNGDIDLTNS LWTYQIGLKG 660 EFSRIYSPEK QGSAGWSSMQ NDDTLSPFTW FKTTFDAPEG NGPVAIDLGS MGKGQAWVNG 720 HLIGRYWSLV APESGCPSSC NYAGNYGDSK CRSNCGIATQ SWYHIPREWL QESDNLLVLF 780 EETGGDPSQI SLEVHYTKTI CSKISETYYP PLSAWSRAAN GRPSVNTVAP ELRLQCDEGH 840 VISKITFASY GTPTGDCQNF SVGNCHASTT LDLVAEACEG KNRCAISVTN DVFGDPCRKV 900 VKDLAVVAEC SPPSANKEPR DDM* 960 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1874 | LacA | 5.0e-21 | 69 | 371 | 364 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam02140 | Gal_Lectin | 6.0e-27 | 834 | 910 | 80 | + Galactose binding lectin domain. | ||
pfam01301 | Glyco_hydro_35 | 7.0e-148 | 75 | 381 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 68 | 911 | 853 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD91079.1 | 0 | 63 | 914 | 30 | 888 | beta-D-galactosidase [Pyrus pyrifolia] |
DDBJ | BAF31232.1 | 0 | 63 | 910 | 25 | 878 | beta-D-galactosidase [Persea americana] |
RefSeq | NP_001066673.1 | 0 | 45 | 923 | 38 | 919 | Os12g0429200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002328900.1 | 0 | 62 | 910 | 29 | 880 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002442888.1 | 0 | 1 | 923 | 1 | 923 | hypothetical protein SORBIDRAFT_08g004410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 4e-38 | 75 | 377 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3d3a_A | 0.000009 | 566 | 793 | 399 | 582 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 5e-36 | 67 | 377 | 9 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 5e-36 | 67 | 377 | 9 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |