| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb08g004430.1 |
| Family | AA5 |
| Protein Properties | Length: 405 Molecular Weight: 43743.3 Isoelectric Point: 7.5994 |
| Chromosome | Chromosome/Scaffold: 8 Start: 5314574 End: 5315860 |
| Description | glyoxal oxidase-related protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA5 | 14 | 404 | 0 |
| HWSEKQDALAANRWYATNQILHDGRAFIVSGRRQFNYEFYPKAGPSDTSIVQMSFLARTKDPEENNLYPFVHLNIDGNLFIFSNNRAVLLDYKSNRIVRT YPVMGDGDPRNYPSSGSSVLLPLKPNPNEAEVLVCGGASAGSYNSTKGGAGTFVPALTTCGRIKITDAAPVAIINGAADGTADTGWESAKTPAYAPVVYR PDHSPGDRFEEQTATGVARLYHSSVVLLRDGRLLVGGSNPHTYYNFSNVQFPTDLGLEAFSPEYLDASNDKLRLRILDPSPTGAPTSVAYGATMTLQFSV PASARRRRGGAAGLGDVSVTMVVPSFTTHSFAMNQRLLFLDVTKNVAVRGRAGTFNASVTMPVTAVLAPPEYYMVFVVNEHIPSEGIWVQI | |||
| Full Sequence |
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| Protein Sequence Length: 405 Download |
| MPACGGTRDD KSCHWSEKQD ALAANRWYAT NQILHDGRAF IVSGRRQFNY EFYPKAGPSD 60 TSIVQMSFLA RTKDPEENNL YPFVHLNIDG NLFIFSNNRA VLLDYKSNRI VRTYPVMGDG 120 DPRNYPSSGS SVLLPLKPNP NEAEVLVCGG ASAGSYNSTK GGAGTFVPAL TTCGRIKITD 180 AAPVAIINGA ADGTADTGWE SAKTPAYAPV VYRPDHSPGD RFEEQTATGV ARLYHSSVVL 240 LRDGRLLVGG SNPHTYYNFS NVQFPTDLGL EAFSPEYLDA SNDKLRLRIL DPSPTGAPTS 300 VAYGATMTLQ FSVPASARRR RGGAAGLGDV SVTMVVPSFT THSFAMNQRL LFLDVTKNVA 360 VRGRAGTFNA SVTMPVTAVL APPEYYMVFV VNEHIPSEGI WVQI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam09118 | DUF1929 | 2.0e-24 | 292 | 404 | 114 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
| cd02851 | E_set_GO_C | 2.0e-25 | 292 | 404 | 114 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
| pfam07250 | Glyoxal_oxid_N | 2.0e-61 | 1 | 150 | 153 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY89314.1 | 0 | 1 | 404 | 142 | 562 | hypothetical protein OsI_10817 [Oryza sativa Indica Group] |
| RefSeq | NP_001149941.1 | 0 | 1 | 404 | 149 | 576 | glyoxal oxidase [Zea mays] |
| RefSeq | XP_002438138.1 | 0 | 1 | 404 | 132 | 557 | hypothetical protein SORBIDRAFT_10g008655 [Sorghum bicolor] |
| RefSeq | XP_002441894.1 | 0 | 1 | 404 | 1 | 404 | hypothetical protein SORBIDRAFT_08g004430 [Sorghum bicolor] |
| RefSeq | XP_002468154.1 | 0 | 1 | 404 | 156 | 581 | hypothetical protein SORBIDRAFT_01g040550 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2eid_A | 0.00000004 | 204 | 393 | 468 | 625 | A Chain A, Galactose Oxidase W290g Mutant |
| PDB | 1k3i_A | 0.00000004 | 204 | 393 | 485 | 642 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 2vz3_A | 0.00000004 | 204 | 393 | 468 | 625 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 2vz1_A | 0.00000004 | 204 | 393 | 468 | 625 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| PDB | 2jkx_A | 0.00000004 | 204 | 393 | 468 | 625 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT645455 | 285 | 58 | 314 | 0 |
| DR803476 | 262 | 81 | 314 | 0 |
| DY535380 | 247 | 96 | 314 | 0 |
| CO526035 | 240 | 103 | 314 | 0 |
| CO531667 | 239 | 104 | 314 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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