| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb08g004905.1 |
| Family | PL1 |
| Protein Properties | Length: 364 Molecular Weight: 40233.6 Isoelectric Point: 7.5884 |
| Chromosome | Chromosome/Scaffold: 8 Start: 6110157 End: 6111426 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 97 | 276 | 0 |
| IVFEVSGTIHLRTYLRVSSYKTIDGRGQRVVLAGKGLQLKSCHHVIVCNLVFEGGRGHDVDGIQIKPDSTNIWIDRCTLADYDDGLIDITRQSTDITVSR CHFMRHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRSWGIYAVCAGVEAQIVSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 364 Download |
| MGSRVSGPHH MDPPPPPPPP PQQQHPPHPQ GERHGGGETM PYQDADHRLR ALAGRAEGFG 60 RHAIGGLHGS IYRVTSLQDD GCGSLREACR GEEPRWIVFE VSGTIHLRTY LRVSSYKTID 120 GRGQRVVLAG KGLQLKSCHH VIVCNLVFEG GRGHDVDGIQ IKPDSTNIWI DRCTLADYDD 180 GLIDITRQST DITVSRCHFM RHDKTMLIGA DPTHVGDRCI RVTIHHCFFD GTRQRHPRLR 240 FGKVHLYNNY TRSWGIYAVC AGVEAQIVSQ CNIYEAGGGP PKKTTVFKYM PEKAGDREDV 300 VAGLVSSEGD AFLNGALPCL IGGPGPVFRP EDYYQQWTME PASPALKDII QLCAGWQPVP 360 RPSD 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-37 | 98 | 272 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-45 | 65 | 280 | 235 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 4.0e-66 | 101 | 278 | 190 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN25563.1 | 0 | 1 | 364 | 1 | 364 | unknown [Zea mays] |
| GenBank | EAY74463.1 | 0 | 24 | 362 | 27 | 361 | hypothetical protein OsI_02351 [Oryza sativa Indica Group] |
| RefSeq | NP_001043284.1 | 0 | 18 | 362 | 21 | 361 | Os01g0546800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149991.1 | 0 | 1 | 362 | 1 | 360 | LOC100283618 [Zea mays] |
| RefSeq | XP_002442919.1 | 0 | 1 | 364 | 1 | 364 | hypothetical protein SORBIDRAFT_08g004905 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 9e-39 | 46 | 316 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 9e-39 | 46 | 316 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-26 | 63 | 350 | 21 | 323 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-23 | 108 | 274 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 5e-22 | 118 | 287 | 82 | 260 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CD441241 | 231 | 132 | 362 | 0 |
| JG177860 | 308 | 57 | 362 | 0 |
| DY275282 | 328 | 39 | 364 | 0 |
| DW066041 | 305 | 61 | 363 | 0 |
| DY277275 | 314 | 40 | 351 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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