| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb08g018360.1 |
| Family | CE8 |
| Protein Properties | Length: 433 Molecular Weight: 46284.2 Isoelectric Point: 7.8033 |
| Chromosome | Chromosome/Scaffold: 8 Start: 48363622 End: 48364920 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 123 | 419 | 0 |
| YVVSPDGKGKFRSINEAIKAVPDGNKRRVILDIRTATYKEKVVVPYMKPFVTFSGNPKNPPVIMWDDRAATRGKDGKPVGTYGSATVAVESDYFMASGVH FKNAAPLAAPGTEGGQAVAVRVYGNKAAFYDCTFDGGQDTLYDHRGLHYFKSCHIQGTVDFIFGFGRSLYEDCAITSVTKDVAIVTAQQRTRSIADALET GFSFLRCRIGSSTGAGQIYLGRAWGDSSRVVYAYTTMGKEVVPVGWDKWTVQKPEHSGIYYGEYQCSGPGALPHKRVGWSLVLNDAQAKPFIGIHFI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 433 Download |
| MARQNCHRPS GVALVAIAIT ATTLLLPCLV SVASSPEEEP LPSSSSSSDD SVAGNGGYGA 60 TNNNNIKMPA ADGGAAGSFT EFVTENVELY SNVSSEQHKY GAGAGGKVWD PELLAAQGMA 120 LRYVVSPDGK GKFRSINEAI KAVPDGNKRR VILDIRTATY KEKVVVPYMK PFVTFSGNPK 180 NPPVIMWDDR AATRGKDGKP VGTYGSATVA VESDYFMASG VHFKNAAPLA APGTEGGQAV 240 AVRVYGNKAA FYDCTFDGGQ DTLYDHRGLH YFKSCHIQGT VDFIFGFGRS LYEDCAITSV 300 TKDVAIVTAQ QRTRSIADAL ETGFSFLRCR IGSSTGAGQI YLGRAWGDSS RVVYAYTTMG 360 KEVVPVGWDK WTVQKPEHSG IYYGEYQCSG PGALPHKRVG WSLVLNDAQA KPFIGIHFIY 420 GDSWILPPPN LA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 3.0e-85 | 125 | 427 | 311 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 2.0e-90 | 124 | 425 | 305 | + pectinesterase | ||
| PLN02634 | PLN02634 | 2.0e-94 | 124 | 427 | 304 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 1.0e-115 | 110 | 431 | 324 | + pectinesterase family protein | ||
| PLN02682 | PLN02682 | 1.0e-117 | 129 | 427 | 299 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC69509.1 | 0 | 42 | 430 | 33 | 413 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
| RefSeq | NP_001067039.1 | 0 | 78 | 430 | 68 | 412 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068464.1 | 0 | 77 | 430 | 44 | 399 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001068465.1 | 0 | 105 | 428 | 22 | 346 | Os11g0683800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002443368.1 | 0 | 1 | 432 | 1 | 432 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 2.94273e-44 | 124 | 425 | 10 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 3e-36 | 124 | 425 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 5e-19 | 124 | 393 | 34 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 4e-18 | 126 | 413 | 12 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 4e-18 | 126 | 413 | 12 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
