| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g001670.1 |
| Family | GH20 |
| Protein Properties | Length: 547 Molecular Weight: 60654.8 Isoelectric Point: 6.2655 |
| Chromosome | Chromosome/Scaffold: 9 Start: 1616773 End: 1622919 |
| Description | beta-hexosaminidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH20 | 185 | 494 | 0 |
| QDEPRFAFRGLLLDTSRHYLPVDVIKQVIDSMSFAKLNVLHWHIIDEESFPLEVPTYPNLWKGSYSKWERYTVEDARDIVNYAKKRGINVMAEIDVPGHA ESWGNGYPKLWPSPNCTEPLDVSSNFTFEVISGILSDMRKIFPFGLFHLGGDEVYTGCWNTTPHVRQWLNEHNMTTKEAYKYFVLKAQQLAIKLNWIPVN WEETFNSFAENLNPLTVVHNWLGPGVCPKVVAKGFKCIMSNQGVWYLDHLDVPWEDVYSGEPLDGISDKDQQKLVLGGEVCMWGETADTSDVLQTIWPRA AAAAERLWSQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 547 Download |
| MPLNLHAYLL SALLLLAGAA AAAAARHHAS PAANATSSSE PVYLWPLPKS VSSGSRTLTV 60 DPDLALDPQG PGGRSPAVAE AFQRYRGHVF TPWAHAARPR GARYDVTRLT VVVNSANDTL 120 ALGVDESYAI YVGAAGGVNS IVGGAIIEAN TIYGAIRGLE TFSQLCVFNY DTKNIEVRNA 180 PWHIQDEPRF AFRGLLLDTS RHYLPVDVIK QVIDSMSFAK LNVLHWHIID EESFPLEVPT 240 YPNLWKGSYS KWERYTVEDA RDIVNYAKKR GINVMAEIDV PGHAESWGNG YPKLWPSPNC 300 TEPLDVSSNF TFEVISGILS DMRKIFPFGL FHLGGDEVYT GCWNTTPHVR QWLNEHNMTT 360 KEAYKYFVLK AQQLAIKLNW IPVNWEETFN SFAENLNPLT VVHNWLGPGV CPKVVAKGFK 420 CIMSNQGVWY LDHLDVPWED VYSGEPLDGI SDKDQQKLVL GGEVCMWGET ADTSDVLQTI 480 WPRAAAAAER LWSQLEAITA QDVETTVLSR LHYFRCLLNH RGIAAAPVTN YYARRPPIGP 540 GSCFVQ* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd02742 | GH20_hexosaminidase | 2.0e-62 | 193 | 493 | 322 | + Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself. | ||
| cd06570 | GH20_chitobiase-like_1 | 1.0e-70 | 190 | 493 | 316 | + A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. | ||
| cd06563 | GH20_chitobiase-like | 5.0e-71 | 190 | 497 | 350 | + The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. | ||
| pfam00728 | Glyco_hydro_20 | 1.0e-99 | 190 | 494 | 335 | + Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold. | ||
| cd06562 | GH20_HexA_HexB-like | 2.0e-149 | 190 | 522 | 353 | + Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in Tay-Sachs, mutations in the beta-subunit cause in a deficiency in both HexA and HexB enzymes and result in Sandhoff disease. In both disorders GM(2) gangliosides accumulate in lysosomes. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004563 | beta-N-acetylhexosaminidase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE62107.1 | 0 | 55 | 546 | 33 | 524 | hypothetical protein OsJ_16891 [Oryza sativa Japonica Group] |
| RefSeq | NP_001054468.1 | 0 | 26 | 546 | 22 | 541 | Os05g0115900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147583.1 | 0 | 24 | 546 | 23 | 545 | LOC100281192 [Zea mays] |
| RefSeq | XP_002282535.1 | 0 | 34 | 546 | 27 | 541 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002440479.1 | 0 | 1 | 546 | 1 | 546 | hypothetical protein SORBIDRAFT_09g001670 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1o7a_F | 0 | 44 | 528 | 15 | 505 | A Chain A, Human Beta-Hexosaminidase B |
| PDB | 1o7a_E | 0 | 44 | 528 | 15 | 505 | A Chain A, Human Beta-Hexosaminidase B |
| PDB | 1o7a_D | 0 | 44 | 528 | 15 | 505 | A Chain A, Human Beta-Hexosaminidase B |
| PDB | 1o7a_C | 0 | 44 | 528 | 15 | 505 | A Chain A, Human Beta-Hexosaminidase B |
| PDB | 1o7a_B | 0 | 44 | 528 | 15 | 505 | A Chain A, Human Beta-Hexosaminidase B |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| chitin degradation II | RXN-12625 | EC-3.2.1.52 | β-L-N-acetylhexosaminidase |
| chitin degradation II | RXN-12626 | EC-3.2.1.52 | β-L-N-acetylhexosaminidase |
