| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g017920.1 |
| Family | CE8 |
| Protein Properties | Length: 574 Molecular Weight: 60606.9 Isoelectric Point: 6.7434 |
| Chromosome | Chromosome/Scaffold: 9 Start: 44742439 End: 44745333 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 257 | 554 | 0 |
| VTVDQSGAGNFTTIGDAVAAAPKNLNGSTGYYVVYVLAGVYEENVVVPKHNKYIMMVGDGIGQTVVTGNRSVVDGWTTFQSATFAVVGQGFVAMNMTFRN TAGPAKHQAVAFRSGADLSAYYGCSFEAYQDTLYTHSLRQFYRGCDVYGTVDYVFGNAAVVFQGCTFYSRLPMQGQCNTVTAQGRSDPNQNTGTSIQGSS LVAAPELAANTAFATLSYLGRPWKNFSRTVVMESYVGGLVDPSGWMPWSGDFALDTLYYAEYNNSGPGADTSRRVAWPGFHVLGDITDAGNFTVTSMV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 574 Download |
| MALHSAAALS ALLLLSFSGL TLSDETPSTP VSPSAACNAT TDPTFCRSVL PPRGKGDLYT 60 YGRFSVAESL AGARKFAAVV DRYLARHRHL SSSAIGALRD CQLMAELNVD FLTAAGATIK 120 STDTLLDPQA DDVHTLLSAI LTNQQTCFDG LQAASGSWSD RGGLDAPIAN GTKLYSLSLS 180 LFTRAWVPTA KPAHPHKSGG GSNGPPHHGH GHGGKSKKPP AAAAAARRGL FDVTDDEMVR 240 RMAMEGPEST VAVNTVVTVD QSGAGNFTTI GDAVAAAPKN LNGSTGYYVV YVLAGVYEEN 300 VVVPKHNKYI MMVGDGIGQT VVTGNRSVVD GWTTFQSATF AVVGQGFVAM NMTFRNTAGP 360 AKHQAVAFRS GADLSAYYGC SFEAYQDTLY THSLRQFYRG CDVYGTVDYV FGNAAVVFQG 420 CTFYSRLPMQ GQCNTVTAQG RSDPNQNTGT SIQGSSLVAA PELAANTAFA TLSYLGRPWK 480 NFSRTVVMES YVGGLVDPSG WMPWSGDFAL DTLYYAEYNN SGPGADTSRR VAWPGFHVLG 540 DITDAGNFTV TSMVLGENWL PQTGVPFTSG LIS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02314 | PLN02314 | 2.0e-135 | 27 | 571 | 560 | + pectinesterase | ||
| PLN02201 | PLN02201 | 1.0e-136 | 132 | 573 | 449 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 9.0e-169 | 257 | 557 | 301 | + Pectinesterase. | ||
| PLN02713 | PLN02713 | 0 | 24 | 573 | 552 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 0 | 32 | 572 | 549 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT38097.1 | 0 | 4 | 573 | 5 | 560 | putative pectinesterase [Oryza sativa Japonica Group] |
| GenBank | EEE63420.1 | 0 | 4 | 573 | 5 | 576 | hypothetical protein OsJ_18232 [Oryza sativa Japonica Group] |
| RefSeq | NP_001042865.1 | 0 | 34 | 571 | 38 | 556 | Os01g0311800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002440965.1 | 0 | 1 | 573 | 1 | 573 | hypothetical protein SORBIDRAFT_09g017920 [Sorghum bicolor] |
| RefSeq | XP_002457749.1 | 0 | 25 | 573 | 33 | 565 | hypothetical protein SORBIDRAFT_03g012820 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 259 | 571 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 249 | 571 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 1e-17 | 254 | 479 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-17 | 254 | 479 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-17 | 254 | 479 | 5 | 245 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
