| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g019350.1 |
| Family | GH2 |
| Protein Properties | Length: 979 Molecular Weight: 110532 Isoelectric Point: 6.2164 |
| Chromosome | Chromosome/Scaffold: 9 Start: 48101537 End: 48109112 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 43 | 766 | 0 |
| APWMSAAVPGTVLGTLLKNNLIPDPFYGLNNQAIVDIADAGRDYYTFWFFTTFQCAPSANQHVTLNFRGINYSAEVYLNGHEEVLPKGMFRRHTIDITDI LHPDGNNQLAVLVHPPDHPGKIPPQGGQGGDHEIGKDVATQYVEGWDWMCPIRDRNTGIWDEVSISISGPVNIIDPHLVSTFHDDFKRSYLHCTLQLENK SSWIADCTLKIQVSTELEGNVCLVEHLQSYAITVPPQSDIEYTIPSLFFYKPNLWWPNGMGKQSLYNVEISVDVKGFGESDSWSHYFGFRKIESTIDDST GGRIFKVNGEPIFIRGGNWILSDGLLRLTKKRYMTDIKFHADMNFNMLRCWGGGLAERPDFYHFCDVYGLMVWQEFWITGDVDGRGDPISNLNGPLDHDL FLLCARDTVKLLRNHASLALWVGGNEQVPPVDINKALKNDLKLHPMFVSYQTSKNEERYLSEESTDPSKYLDGTRVYVQGSMWDGFANGKGDWTDGPYEI QYPESFFKDSFYKYGFNPEVGSVGVPVAATIRATMPPVGWSIPIFKKRIDGYIEEVPNPIWDYHKYIPYSKPGKVHDQIELYGTPKDLDDFCEKAQLVNY VQYRALLEGWTSFMWTKFTGVLIWKTQNPWTGLRGQFYDHLQDQTAGFYGCRCASEPIHVQLNLVTFFVEVVNTTADELKDMAVEISVWDLDGACPYYKV TEKIVVPPKKVKQTIEMKYPKMKD | |||
| Full Sequence |
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| Protein Sequence Length: 979 Download |
| MAVAVGKRVL DTGWLAARST EVALTGVQLT TTHPPAADPA PPAPWMSAAV PGTVLGTLLK 60 NNLIPDPFYG LNNQAIVDIA DAGRDYYTFW FFTTFQCAPS ANQHVTLNFR GINYSAEVYL 120 NGHEEVLPKG MFRRHTIDIT DILHPDGNNQ LAVLVHPPDH PGKIPPQGGQ GGDHEIGKDV 180 ATQYVEGWDW MCPIRDRNTG IWDEVSISIS GPVNIIDPHL VSTFHDDFKR SYLHCTLQLE 240 NKSSWIADCT LKIQVSTELE GNVCLVEHLQ SYAITVPPQS DIEYTIPSLF FYKPNLWWPN 300 GMGKQSLYNV EISVDVKGFG ESDSWSHYFG FRKIESTIDD STGGRIFKVN GEPIFIRGGN 360 WILSDGLLRL TKKRYMTDIK FHADMNFNML RCWGGGLAER PDFYHFCDVY GLMVWQEFWI 420 TGDVDGRGDP ISNLNGPLDH DLFLLCARDT VKLLRNHASL ALWVGGNEQV PPVDINKALK 480 NDLKLHPMFV SYQTSKNEER YLSEESTDPS KYLDGTRVYV QGSMWDGFAN GKGDWTDGPY 540 EIQYPESFFK DSFYKYGFNP EVGSVGVPVA ATIRATMPPV GWSIPIFKKR IDGYIEEVPN 600 PIWDYHKYIP YSKPGKVHDQ IELYGTPKDL DDFCEKAQLV NYVQYRALLE GWTSFMWTKF 660 TGVLIWKTQN PWTGLRGQFY DHLQDQTAGF YGCRCASEPI HVQLNLVTFF VEVVNTTADE 720 LKDMAVEISV WDLDGACPYY KVTEKIVVPP KKVKQTIEMK YPKMKDAKPV YFLLLKLFRL 780 SDNGIISRNF YWLHLPGQDY KLLGQYQQKK IPLKIYSDIS VSGTMHKVRM TVENNSKKSV 840 AESTRSLSAM DLGDVSGSHS TGKETTRKGN ESDGLWRKIS NGLGFARPSD NQRTLEVNGT 900 DSGVAFFLHF SVHTSESSTA KEEYNDTRIL PVHYSDNYFS LTPGEKMAID ISFEAPQGSN 960 PKVVLRGWNH HLDHAVMI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK09525 | lacZ | 0.0006 | 93 | 468 | 417 | + beta-D-galactosidase; Reviewed | ||
| pfam02837 | Glyco_hydro_2_N | 2.0e-8 | 88 | 156 | 70 | + Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. | ||
| pfam00703 | Glyco_hydro_2 | 2.0e-11 | 215 | 332 | 118 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 6.0e-12 | 102 | 468 | 389 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 9.0e-33 | 63 | 674 | 634 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79162.1 | 0 | 5 | 978 | 16 | 985 | hypothetical protein OsI_19836 [Oryza sativa Indica Group] |
| RefSeq | NP_001055444.1 | 0 | 6 | 978 | 16 | 984 | Os05g0391500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002319539.1 | 0 | 5 | 976 | 4 | 972 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002439742.1 | 0 | 1 | 978 | 1 | 978 | hypothetical protein SORBIDRAFT_09g019350 [Sorghum bicolor] |
| RefSeq | XP_002512381.1 | 0 | 5 | 977 | 4 | 973 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 41 | 793 | 77 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 41 | 793 | 77 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 41 | 793 | 77 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO871600 | 333 | 304 | 636 | 0 |
| ES793920 | 385 | 377 | 757 | 0 |
| GO847639 | 344 | 521 | 864 | 0 |
| GO848159 | 317 | 173 | 489 | 0 |
| CK208936 | 346 | 445 | 790 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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