| Basic Information | |
|---|---|
| Species | Sorghum bicolor |
| Cazyme ID | Sb09g026060.1 |
| Family | CE8 |
| Protein Properties | Length: 407 Molecular Weight: 44212.4 Isoelectric Point: 9.7635 |
| Chromosome | Chromosome/Scaffold: 9 Start: 55392090 End: 55394804 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 109 | 400 | 0 |
| VVDKNPAAGNFTSIQAAVDSLPLINLARVVIRVNAGTYTEKVNISPMRAFVTVEGAGADKTVVQWGDTADTAGSFGRPMGTFGSATFAVNSMFFVAKNIT FKNTAPVPRPGALGKQGVALRISADNAAFVGCNFLGAQDTLYDHLGRHYYRDCYIEGSVDFIFGNALSLYEGCHVHAIARNYGALTAQNRQSLLEDTGFS FVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPTREMTVFYGQYKCTGPGANYAGRVQWSRELTDEEAKPFISLDFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 407 Download |
| MGVPSRARAR LLLCCVVAAA LLVVAPGEVA AAAAGHGKQR HTHTRRLRPG KSAAAAAAAK 60 PLPYYPVNAT RVDAIERQFT RWVRFMGGVG HSSYNRALNR AFLPTRTLVV DKNPAAGNFT 120 SIQAAVDSLP LINLARVVIR VNAGTYTEKV NISPMRAFVT VEGAGADKTV VQWGDTADTA 180 GSFGRPMGTF GSATFAVNSM FFVAKNITFK NTAPVPRPGA LGKQGVALRI SADNAAFVGC 240 NFLGAQDTLY DHLGRHYYRD CYIEGSVDFI FGNALSLYEG CHVHAIARNY GALTAQNRQS 300 LLEDTGFSFV NCRVTGSGAL YLGRAWGTFS RVVFAYTYMD NIIIPRGWYN WGDPTREMTV 360 FYGQYKCTGP GANYAGRVQW SRELTDEEAK PFISLDFIDG FEWLKL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 2.0e-111 | 117 | 405 | 289 | + putative pectinesterase | ||
| PLN02634 | PLN02634 | 1.0e-112 | 106 | 404 | 300 | + probable pectinesterase | ||
| PLN02665 | PLN02665 | 8.0e-117 | 106 | 404 | 301 | + pectinesterase family protein | ||
| PLN02304 | PLN02304 | 1.0e-117 | 105 | 405 | 309 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 0 | 63 | 406 | 344 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79546.1 | 0 | 12 | 406 | 13 | 398 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
| RefSeq | NP_001044216.1 | 0 | 7 | 406 | 4 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001056077.1 | 0 | 12 | 406 | 13 | 398 | Os05g0521600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002440102.1 | 0 | 1 | 406 | 1 | 406 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
| RefSeq | XP_002458469.1 | 0 | 8 | 406 | 5 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 116 | 405 | 16 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 7.00649e-43 | 117 | 405 | 13 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 3e-27 | 109 | 392 | 34 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 3e-17 | 105 | 392 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 3e-17 | 105 | 392 | 3 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
